Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE/comE1   Type   Regulator
Locus tag   V6U69_RS02480 Genome accession   NZ_CP145867
Coordinates   470180..470917 (+) Length   245 a.a.
NCBI ID   WP_247915315.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS10     
Function   activate transcription of early competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 465180..475917
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U69_RS02455 (V6U69_02455) - 465226..465558 (+) 333 WP_080610781.1 hypothetical protein -
  V6U69_RS02460 (V6U69_02460) - 465761..466111 (+) 351 Protein_463 LLM class flavin-dependent oxidoreductase -
  V6U69_RS02465 (V6U69_02465) - 466207..466959 (+) 753 WP_070437755.1 DUF4767 domain-containing protein -
  V6U69_RS02470 (V6U69_02470) tehB 467042..467920 (-) 879 WP_410534110.1 SAM-dependent methyltransferase TehB -
  V6U69_RS02475 (V6U69_02475) - 468699..469964 (-) 1266 WP_247915316.1 matrixin family metalloprotease -
  V6U69_RS02480 (V6U69_02480) comE/comE1 470180..470917 (+) 738 WP_247915315.1 LytR/AlgR family response regulator transcription factor Regulator
  V6U69_RS02485 (V6U69_02485) - 471229..472407 (+) 1179 WP_064524194.1 sensor histidine kinase -
  V6U69_RS02490 (V6U69_02490) - 472519..473898 (+) 1380 WP_410534111.1 hypothetical protein -
  V6U69_RS02495 (V6U69_02495) rpsP 474063..474335 (+) 273 WP_002884675.1 30S ribosomal protein S16 -
  V6U69_RS02500 (V6U69_02500) - 474347..474595 (+) 249 WP_002884680.1 KH domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 28060.04 Da        Isoelectric Point: 4.7802

>NTDB_id=853941 V6U69_RS02480 WP_247915315.1 470180..470917(+) (comE/comE1) [Streptococcus salivarius strain KSS10]
MLSIIVLEDDALQRHRVGRLLDEAVEESKAVVDGITFYEQGQELLDADRGSGKSMIYLLDIDLKNQTKQGLDIGLEVRKE
DLKAQIAFVTAYSEFMPLTFRYKIQALDFVDKSMEDVDLKRALVELLDFAYSQVEQETKAQSLTVKTDKNDVNIPYDDIL
YIETAPVPHKLIAHTKSNLVEFYGKIAEVAKLDDIFFQTHRSFVVNVNNVTSVDRTANMVFFEGNESCLLSRTRKKELLE
RLKNR

Nucleotide


Download         Length: 738 bp        

>NTDB_id=853941 V6U69_RS02480 WP_247915315.1 470180..470917(+) (comE/comE1) [Streptococcus salivarius strain KSS10]
ATGCTTTCTATTATCGTCCTTGAAGATGATGCCTTGCAGCGCCATCGTGTTGGTCGTTTATTGGACGAAGCAGTTGAGGA
GTCGAAGGCCGTTGTTGATGGGATTACTTTTTATGAACAGGGTCAGGAATTGTTAGATGCTGATAGAGGTTCGGGTAAAT
CCATGATTTATCTTTTGGATATTGACCTTAAAAATCAAACTAAGCAGGGACTAGATATTGGGCTTGAAGTCCGTAAGGAA
GACTTGAAAGCACAAATTGCTTTTGTTACAGCTTACTCGGAGTTTATGCCCTTGACCTTCCGTTATAAGATTCAAGCTCT
AGACTTTGTCGATAAATCCATGGAAGATGTGGATCTTAAGAGAGCTTTAGTAGAACTTTTAGATTTTGCTTATTCACAGG
TTGAGCAAGAAACCAAGGCACAGAGTCTAACTGTTAAAACGGATAAAAATGATGTTAATATTCCTTATGATGATATTTTA
TACATTGAGACAGCCCCTGTGCCACATAAGTTAATCGCTCATACCAAGTCAAACCTAGTGGAATTCTATGGGAAAATTGC
AGAAGTAGCAAAATTGGATGATATTTTCTTCCAAACGCACCGCTCTTTTGTTGTCAATGTGAATAATGTGACAAGTGTGG
ATCGTACAGCTAATATGGTCTTCTTTGAGGGAAACGAGTCATGCCTCCTATCGCGGACACGTAAAAAGGAACTTTTGGAA
CGTTTGAAAAATCGTTAG

Domains

Predicted by InterProScan.

LytTr DNA-binding domain (LytTR)

(152-242)

Response regulator receiver domain (Response_reg)

(4-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE/comE1 Streptococcus equinus JB1

36.626

99.184

0.363