Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   V6U68_RS05175 Genome accession   NZ_CP145866
Coordinates   1064585..1065655 (+) Length   356 a.a.
NCBI ID   WP_013990605.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1059585..1070655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U68_RS05160 (V6U68_05150) - 1061069..1062004 (-) 936 WP_107373368.1 IS30 family transposase -
  V6U68_RS05165 (V6U68_05155) - 1062158..1063204 (-) 1047 WP_410532070.1 hypothetical protein -
  V6U68_RS05170 (V6U68_05160) - 1063328..1064317 (+) 990 WP_410532071.1 lipoate--protein ligase -
  V6U68_RS05175 (V6U68_05165) xerS 1064585..1065655 (+) 1071 WP_013990605.1 tyrosine recombinase XerS Machinery gene
  V6U68_RS05180 (V6U68_05170) - 1065819..1068359 (-) 2541 WP_247915568.1 M1 family metallopeptidase -
  V6U68_RS05185 (V6U68_05175) phoU 1068493..1069146 (-) 654 WP_004182526.1 phosphate signaling complex protein PhoU -
  V6U68_RS05190 (V6U68_05180) pstB 1069175..1069933 (-) 759 WP_247915569.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41446.55 Da        Isoelectric Point: 9.4644

>NTDB_id=853847 V6U68_RS05175 WP_013990605.1 1064585..1065655(+) (xerS) [Streptococcus salivarius strain KSS9]
MKRELLLEKIEEYKSLMPWFVLEYYQSKLSVPYSFTTLYEYLKEYKRFFDWLIDSGISDAHDIASIDIKTLENLTKKDME
SFVLYLRERPSLNTYSKKQGVSQTTINRTLSALSSLYKYLTEEVEGPDGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETMEFLDYVENEYEVKLSNRAKSSFYKNKERDLAIIALLLASGVRLSEAVNLDLKDINLKMMVIDVTRKGGKRDS
VNVASFAKPYLENYLSIRDKRYKAEKQDLALFLTEYRGVPNRIDASSIEKMVAKYSQDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=853847 V6U68_RS05175 WP_013990605.1 1064585..1065655(+) (xerS) [Streptococcus salivarius strain KSS9]
ATGAAACGTGAACTCTTACTCGAAAAAATTGAAGAATACAAATCTCTAATGCCCTGGTTTGTCTTGGAGTATTATCAGTC
TAAACTATCGGTTCCATATTCTTTTACGACCTTATACGAATACCTTAAGGAATATAAACGCTTTTTTGACTGGCTGATTG
ACTCAGGTATTTCAGATGCTCATGATATTGCCTCAATTGACATCAAAACACTGGAAAATCTAACTAAAAAAGACATGGAG
TCATTTGTGCTCTATCTACGTGAACGTCCGTCCTTAAATACCTATTCCAAGAAACAGGGAGTTTCTCAAACAACCATTAA
CCGTACGCTTTCAGCTCTATCTAGTCTCTATAAGTATTTAACTGAGGAGGTCGAGGGTCCTGACGGTGAGCCATATTTCT
ATCGTAACGTCATGAAAAAAGTTTCTACTAAGAAAAAGAAAGAAACTCTAGCTGCACGTGCTGAGAATATCAAGCAGAAA
CTTTTTCTAGGCGATGAAACCATGGAATTTCTTGATTATGTCGAAAATGAATACGAAGTTAAGCTCTCAAATCGCGCAAA
ATCTTCGTTTTACAAGAATAAAGAACGTGATTTAGCGATAATAGCCTTGCTACTGGCTTCAGGGGTTCGACTTTCTGAGG
CTGTTAACCTGGACCTTAAAGATATCAATCTGAAAATGATGGTCATTGATGTTACTCGAAAAGGTGGCAAACGAGACTCA
GTTAATGTAGCAAGTTTTGCAAAACCTTATCTTGAGAATTATCTTAGTATACGTGATAAACGCTATAAGGCTGAAAAGCA
AGACCTTGCCCTATTTTTAACGGAATATCGAGGTGTTCCAAACCGTATTGATGCTTCAAGTATCGAAAAAATGGTTGCCA
AATATTCTCAGGATTTCAAGATACGTGTGACTCCCCATAAACTACGACACACTCTGGCAACACGTCTTTATGATGCTACC
AAGTCTCAAGTTCTAGTTAGCCACCAACTTGGCCATGCTTCCACTCAGGTCACTGATCTTTATACTCATATCGTCAATGA
TGAGCAAAAAAATGCTCTAGATAATTTATAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(183-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

83.427

100

0.834