Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   V6U68_RS04355 Genome accession   NZ_CP145866
Coordinates   873428..875098 (+) Length   556 a.a.
NCBI ID   WP_410531999.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 868428..880098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U68_RS04325 (V6U68_04315) - 868816..869574 (+) 759 WP_410531996.1 hypothetical protein -
  V6U68_RS04330 (V6U68_04320) xseA 869761..871089 (+) 1329 WP_073690075.1 exodeoxyribonuclease VII large subunit -
  V6U68_RS04335 (V6U68_04325) - 871079..871294 (+) 216 WP_002884058.1 exodeoxyribonuclease VII small subunit -
  V6U68_RS04340 (V6U68_04330) - 871294..872166 (+) 873 WP_073690076.1 polyprenyl synthetase family protein -
  V6U68_RS04345 (V6U68_04335) - 872159..872986 (+) 828 WP_410531997.1 TlyA family RNA methyltransferase -
  V6U68_RS04350 (V6U68_04340) - 872973..873419 (+) 447 WP_410531998.1 arginine repressor -
  V6U68_RS04355 (V6U68_04345) recN 873428..875098 (+) 1671 WP_410531999.1 DNA repair protein RecN Machinery gene
  V6U68_RS04360 (V6U68_04350) - 875168..876010 (+) 843 WP_410532000.1 DegV family protein -
  V6U68_RS04365 (V6U68_04355) - 876003..876878 (+) 876 WP_070575108.1 SGNH/GDSL hydrolase family protein -
  V6U68_RS04370 (V6U68_04360) - 876871..877443 (+) 573 WP_107372973.1 YpmS family protein -
  V6U68_RS04375 (V6U68_04365) - 877580..877855 (+) 276 WP_002884048.1 HU family DNA-binding protein -
  V6U68_RS04380 (V6U68_04370) - 877915..878115 (+) 201 WP_002890779.1 hypothetical protein -
  V6U68_RS04385 (V6U68_04375) - 878178..879113 (-) 936 WP_410532001.1 dihydroorotate oxidase -
  V6U68_RS04390 (V6U68_04380) - 879369..880061 (+) 693 WP_000240128.1 phosphoglycerate mutase -

Sequence

Protein


Download         Length: 556 a.a.        Molecular weight: 62301.40 Da        Isoelectric Point: 4.5371

>NTDB_id=853840 V6U68_RS04355 WP_410531999.1 873428..875098(+) (recN) [Streptococcus salivarius strain KSS9]
MLLEITIKNFAIIEEISLNFENGMTVLTGETGAGKSIIIDAMNLMLGARASSEVVRHSASKAEIQGFFSIEQNPALVSIL
EDNGIPVEDELIIRREIFQNGRSVSRINGQMVNLTTLKAVGHFLVDIHGQHDQEELMKPALHIIMLDAFGDKEFFQTKKE
YQEYFDRYRELRKGVLEKQKNEQEHKARIEMLAFQIAEIEAVSLKSGEDLALMQERDKLLNHKLIADTLTNAYVMLDNED
FSSLSNVRSAMNDLQSLEEYDSDYKELSGNLSEAYYVLEDVTKQLGDFLDNLDFDAGRLQEIEHRLDTINAITRKYGGTV
DDVLDYLENSSKEYNLLTGNSSSSDAMEQELKQLEKDLLASAETLQTARHQIATALEAEIKSELCDLYMDKADFKVTFTK
GKFNRDGNEQVEFYISTNPGEGFKPLVKVASGGELSRLMLAIKSAFARKEDKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
SHGQVLAISHLPQVIAIADYQFFISKESDNETTVSRVRLLTPEERVQEIAKMLAGDNVTEAALSQARALLKVDDSL

Nucleotide


Download         Length: 1671 bp        

>NTDB_id=853840 V6U68_RS04355 WP_410531999.1 873428..875098(+) (recN) [Streptococcus salivarius strain KSS9]
ATGCTTCTCGAAATTACGATAAAGAATTTCGCAATTATTGAAGAGATTTCTCTAAACTTTGAGAATGGTATGACCGTCCT
TACTGGTGAAACAGGTGCTGGTAAGTCCATTATTATAGATGCTATGAATCTTATGTTGGGTGCTAGGGCTTCTAGTGAGG
TTGTCCGTCATTCAGCATCTAAGGCTGAAATTCAGGGCTTCTTTTCAATCGAACAAAATCCTGCCTTGGTTAGTATCTTG
GAAGATAATGGGATTCCTGTTGAGGATGAATTGATTATCCGTCGTGAAATCTTCCAAAATGGTAGAAGTGTTAGTCGCAT
CAATGGGCAGATGGTCAATTTAACGACGCTTAAGGCTGTTGGGCACTTCTTGGTAGATATCCATGGACAACATGACCAGG
AAGAGCTTATGAAACCTGCTCTGCATATTATCATGCTTGATGCCTTTGGTGACAAGGAATTTTTCCAGACTAAGAAAGAG
TACCAGGAGTATTTTGACCGCTATCGTGAGTTAAGAAAAGGTGTTCTTGAAAAGCAGAAAAATGAGCAGGAGCATAAGGC
TCGAATTGAAATGTTAGCATTTCAGATTGCAGAAATTGAAGCAGTCTCTCTAAAATCAGGAGAAGATTTGGCTTTGATGC
AGGAGCGAGACAAGCTTCTTAATCATAAGCTGATTGCTGATACCTTAACAAATGCCTATGTCATGCTGGATAATGAAGAT
TTTTCAAGCCTTTCAAATGTTCGTTCTGCCATGAATGACCTCCAGTCTCTTGAAGAGTATGACTCTGATTACAAAGAACT
CTCTGGAAATCTATCAGAAGCCTATTATGTTCTGGAAGATGTCACTAAGCAACTAGGTGATTTTTTGGATAATCTGGACT
TTGATGCTGGGCGTTTACAAGAGATTGAACACCGCTTAGATACCATTAATGCCATTACTCGTAAATATGGTGGGACTGTC
GATGACGTCTTGGATTATCTGGAAAATTCAAGTAAAGAATACAATCTTCTGACAGGAAACTCTAGCTCGTCAGATGCTAT
GGAACAAGAGCTTAAGCAACTTGAAAAGGACCTGCTTGCGTCTGCGGAGACCCTACAAACAGCACGCCATCAAATTGCTA
CGGCTCTTGAAGCTGAGATTAAGAGCGAGTTATGCGACCTCTATATGGATAAGGCTGATTTTAAAGTCACCTTTACTAAG
GGGAAATTTAATCGTGATGGCAATGAGCAGGTTGAGTTTTACATCTCAACCAATCCAGGTGAGGGCTTTAAACCGCTTGT
TAAGGTAGCTTCAGGTGGCGAATTATCTCGACTCATGTTAGCGATTAAGTCAGCCTTTGCCCGCAAAGAAGATAAAACAA
GTATCGTCTTTGATGAGGTTGACACTGGCGTTTCAGGACGTGTTGCCCAAGCCATCGCTCAGAAGATTCATAAGATTGGG
AGTCATGGTCAGGTCTTGGCCATCAGTCACCTTCCGCAAGTTATTGCTATTGCTGATTATCAGTTCTTTATTTCTAAGGA
AAGCGATAATGAGACAACTGTCTCTCGTGTTCGTCTTTTGACACCTGAGGAAAGGGTGCAAGAAATCGCTAAGATGTTAG
CAGGTGATAACGTGACGGAGGCTGCCTTGAGCCAAGCAAGAGCTTTGTTAAAGGTGGATGACTCTCTTTAG

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.979

100

0.453