Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   V6U68_RS04300 Genome accession   NZ_CP145866
Coordinates   863318..865519 (+) Length   733 a.a.
NCBI ID   WP_410531994.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 858318..870519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U68_RS04275 (V6U68_04265) hflX 858792..860030 (+) 1239 WP_410531991.1 GTPase HflX -
  V6U68_RS04280 (V6U68_04270) - 860023..860664 (+) 642 WP_410531992.1 cystathionine beta-lyase -
  V6U68_RS04285 (V6U68_04275) rnz 860696..861625 (+) 930 WP_270536915.1 ribonuclease Z -
  V6U68_RS04290 (V6U68_04280) - 861625..862392 (+) 768 WP_410531993.1 SDR family NAD(P)-dependent oxidoreductase -
  V6U68_RS04295 (V6U68_04285) - 862603..863007 (+) 405 WP_247915479.1 GNAT family N-acetyltransferase -
  V6U68_RS04300 (V6U68_04290) recJ 863318..865519 (+) 2202 WP_410531994.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  V6U68_RS04305 (V6U68_04295) - 865639..866157 (+) 519 WP_002890753.1 adenine phosphoribosyltransferase -
  V6U68_RS04310 (V6U68_04300) metA 866330..867274 (+) 945 WP_410531995.1 homoserine O-succinyltransferase -
  V6U68_RS04315 (V6U68_04305) - 867346..868044 (+) 699 WP_195914768.1 DnaD domain-containing protein -
  V6U68_RS04320 (V6U68_04310) nth 868044..868688 (+) 645 WP_021144303.1 endonuclease III -
  V6U68_RS04325 (V6U68_04315) - 868816..869574 (+) 759 WP_410531996.1 hypothetical protein -

Sequence

Protein


Download         Length: 733 a.a.        Molecular weight: 82163.36 Da        Isoelectric Point: 4.3776

>NTDB_id=853839 V6U68_RS04300 WP_410531994.1 863318..865519(+) (recJ) [Streptococcus salivarius strain KSS9]
MITSTYDWKINTKEPDAGFFKLAKEHGLAETAAKIAYERGITTEEALEDFLKADLSHLHDPYLLHDMDKAVARIRQAIEN
YEQILVYGDYDADGMTSASIVKEALEMMGAEARVYLPNRFTDGYGPNESVYKYFIEQEGISLIVTVDNGVAGNEAIAYAQ
EQGVDVIVTDHHSMPSQLPDAYAIVHPEHPDADYPFKYLAGCGVAFKLATALLETIPTEMLDLVAIGTIADMVSLTDENR
IMVKVGLEILKTTERIGLQELLRISDVDPTTISEETVGFKLAPQLNALGRLDDPNPAIELLTGFDDEEAQAIALEINAKN
EERKEVVQKIFDEAMTMVDLDKPVQVLAKEGWHPGVLGIVAGRIMEQISQTVVVLNIADGLAKGSARSLESINIFHALDD
HRDIFTAFGGHAGAAGMTLPEENLGQLSDILCNYVYDNDIDTSAKNTLHLDEELQLSELSLDTIKSLEKLAPFGMDNKKP
VFWLHDITVTQARTMGQNGAHLKFKVKQGKDSFDVVAFNKGHLLQEFQQAQGLELAVTLSVNVWNGQTTLQLMLEDARVD
GVQLFDFRSKNMALPEGLPTVEEASDTEPAVVLNTLPDSATELKEWFEGKDFQAIYFKNSIKQAYYLTGYGTREQFARLY
KTIYQFPEFDVRYKLDELSHYLKIDKILLIKMIQIFDELDFVTINNGVMTVNKEAEKREIEDSKIFQDLKHLVKFQELMA
LGTPQEIYDWLYK

Nucleotide


Download         Length: 2202 bp        

>NTDB_id=853839 V6U68_RS04300 WP_410531994.1 863318..865519(+) (recJ) [Streptococcus salivarius strain KSS9]
ATGATTACATCAACGTATGATTGGAAAATAAACACAAAAGAGCCAGATGCTGGCTTTTTTAAACTTGCCAAAGAACATGG
GCTGGCAGAAACAGCAGCCAAGATTGCTTATGAACGTGGCATTACGACAGAAGAGGCTCTTGAAGACTTTCTTAAGGCTG
ATCTATCACACCTTCATGATCCTTATCTTCTTCATGATATGGACAAGGCAGTGGCTAGAATTCGTCAGGCCATTGAAAAT
TACGAGCAAATCTTAGTCTATGGAGATTATGATGCGGATGGGATGACGTCAGCATCGATTGTCAAGGAAGCTCTTGAAAT
GATGGGCGCTGAAGCTCGAGTCTATTTGCCTAACCGTTTCACAGATGGTTATGGACCAAACGAAAGTGTCTACAAGTATT
TCATTGAGCAGGAAGGCATTTCACTCATTGTTACAGTGGATAATGGGGTAGCGGGTAATGAGGCTATTGCGTATGCGCAA
GAGCAAGGTGTGGACGTTATCGTTACAGATCATCATAGCATGCCATCACAGCTTCCAGATGCCTACGCCATTGTCCATCC
AGAGCATCCAGATGCCGATTATCCTTTTAAGTATTTGGCAGGATGTGGTGTAGCTTTCAAATTAGCAACTGCCCTCCTTG
AAACTATTCCTACAGAGATGTTGGACTTGGTAGCCATTGGCACCATTGCTGATATGGTTAGCCTAACGGATGAAAATCGT
ATTATGGTCAAGGTCGGCCTGGAAATTCTCAAGACTACTGAGCGTATTGGACTTCAAGAATTGCTCCGCATTTCAGATGT
GGACCCAACAACGATTTCCGAAGAAACGGTAGGCTTTAAACTGGCTCCTCAACTCAATGCCTTGGGACGCTTAGATGATC
CAAATCCAGCCATTGAACTACTGACCGGATTTGACGATGAGGAAGCTCAAGCCATTGCTCTGGAAATCAATGCTAAAAAT
GAAGAACGTAAGGAAGTTGTTCAAAAAATCTTTGATGAAGCCATGACTATGGTAGACTTGGACAAACCAGTTCAGGTTTT
GGCCAAGGAAGGTTGGCATCCTGGCGTTCTAGGTATTGTGGCTGGGCGCATCATGGAACAAATCAGCCAGACAGTAGTGG
TTTTGAATATTGCAGATGGCTTGGCTAAGGGTTCGGCCCGTAGTTTGGAATCAATCAATATCTTCCATGCCCTTGATGAT
CACCGAGATATCTTTACTGCATTTGGAGGACATGCTGGAGCGGCTGGGATGACCCTTCCGGAGGAAAATCTTGGTCAACT
CTCAGATATTTTGTGCAATTATGTCTATGACAATGACATAGATACGAGTGCCAAAAACACGCTTCATTTAGACGAGGAGC
TTCAACTCAGCGAGCTTAGCTTGGATACCATTAAGAGCCTTGAAAAACTAGCACCTTTCGGTATGGATAATAAAAAGCCA
GTCTTTTGGCTACATGATATTACCGTTACTCAAGCTAGGACAATGGGACAAAATGGGGCCCATCTTAAGTTTAAGGTTAA
GCAAGGAAAGGATAGTTTTGATGTTGTGGCCTTTAATAAAGGTCATTTGCTTCAAGAATTCCAACAAGCTCAGGGGTTGG
AATTAGCAGTGACCCTGTCCGTTAATGTATGGAATGGTCAGACAACGCTCCAGCTCATGCTAGAAGATGCGCGTGTGGAT
GGTGTTCAGTTATTTGATTTTCGCTCAAAAAATATGGCACTACCTGAAGGCCTACCAACGGTAGAAGAAGCATCAGACAC
TGAACCTGCGGTTGTCCTCAACACCTTACCTGATTCAGCAACGGAATTAAAAGAGTGGTTTGAAGGTAAGGATTTCCAAG
CGATATACTTTAAGAATAGCATCAAACAGGCCTATTATCTGACAGGTTATGGAACAAGAGAGCAATTTGCAAGACTCTAT
AAAACCATTTACCAATTCCCAGAATTCGATGTCCGCTATAAACTGGATGAGCTAAGTCATTACCTTAAAATCGATAAGAT
CCTTCTGATTAAGATGATTCAGATTTTTGATGAATTGGATTTTGTGACTATTAATAATGGTGTTATGACAGTCAATAAAG
AAGCTGAAAAACGTGAGATTGAGGACAGCAAGATTTTCCAAGATCTTAAACATCTCGTCAAGTTCCAAGAACTTATGGCT
TTAGGGACACCACAGGAAATTTATGACTGGCTTTATAAGTAG

Domains

Predicted by InterProScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(584-731)

DHHA1 domain (DHHA1)

(317-430)

DHH family (DHH)

(83-228)

RecJ OB domain (RecJ_OB)

(451-556)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

67.663

100

0.679
  recJ Bacillus subtilis subsp. subtilis str. 168

37.548

100

0.397