Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   V6U68_RS02780 Genome accession   NZ_CP145866
Coordinates   550610..552346 (+) Length   578 a.a.
NCBI ID   WP_410531881.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS9     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 545610..557346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U68_RS02740 (V6U68_02735) - 545691..546095 (+) 405 WP_410531875.1 hypothetical protein -
  V6U68_RS02745 (V6U68_02740) - 546148..546417 (+) 270 WP_410531876.1 hypothetical protein -
  V6U68_RS02750 (V6U68_02745) - 546507..546774 (+) 268 Protein_494 peptidylprolyl isomerase -
  V6U68_RS02755 (V6U68_02750) - 546759..546941 (-) 183 Protein_495 IS110 family transposase -
  V6U68_RS02760 (V6U68_02755) - 547460..548137 (+) 678 WP_410531877.1 transposase -
  V6U68_RS02765 (V6U68_02760) - 548134..549099 (+) 966 WP_410531878.1 IS3 family transposase -
  V6U68_RS02770 (V6U68_02765) tnpA 549298..549762 (+) 465 WP_410531879.1 IS200/IS605 family transposase -
  V6U68_RS02775 (V6U68_02770) - 550135..550392 (+) 258 WP_021152202.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  V6U68_RS02780 (V6U68_02775) rcrP 550610..552346 (+) 1737 WP_410531881.1 ABC transporter ATP-binding protein Regulator
  V6U68_RS02785 (V6U68_02780) rcrQ 552359..554146 (+) 1788 WP_410531882.1 ABC transporter ATP-binding protein Regulator
  V6U68_RS02790 (V6U68_02785) queA 554243..555286 (-) 1044 WP_175064740.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  V6U68_RS02795 (V6U68_02790) - 555440..556141 (+) 702 WP_410531883.1 glucosamine-6-phosphate deaminase -
  V6U68_RS02800 (V6U68_02795) - 556331..557314 (+) 984 WP_021152191.1 rhodanese-related sulfurtransferase -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 64785.70 Da        Isoelectric Point: 5.5882

>NTDB_id=853826 V6U68_RS02780 WP_410531881.1 550610..552346(+) (rcrP) [Streptococcus salivarius strain KSS9]
MAYIWSYLRRYPKWLAMNFTAAILFVIANLGLPTVLARMIDEGINRGDVDKLYAYAWVMFGVVLTGIVGRILLSYAVGKL
TTTMVQVMRNDIYAKLQEYSHHEYEQIGVSSLVTRITSDAFVLMQFADQVLKLGVITPLMMVSSVFLILTTSPSLAWIVA
ISLPFLAVVVWYVAVKTRPLSEKQQATLDKINQYARENLTGLRVIRAFAREDFQEKKFASENAVYADNSNKLFKLTGLTE
PLFVQIIIAMIVAIVWFALEPLGSGSLAIGDLVAFIEYSFHALLSFLFLANLFTMYPRTAVSSERLQEIMDMPISINPNE
DGVTETETKGYLEFDNVTFAYPGETESPVLHNISFKAKPGETIAFIGSTGSGKSSLVQLIPRFYDVTLGRILVDGVDVRD
YNIKALRRKIGFIPQKALLFTGTIGENIRYGKENASHEELNQATDVAQAKEFIESKEERYDSHLAEGGSNLSGGQKQRLS
IARAVVKRPDLYIFDDSFSALDYKTDATLRRRLKEVTQDATVLIVAQRVGTIMDADQIIVLDKGEIVGRGRHEELMESND
IYREIANSQLNQKSLTED

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=853826 V6U68_RS02780 WP_410531881.1 550610..552346(+) (rcrP) [Streptococcus salivarius strain KSS9]
ATGGCTTATATTTGGTCTTATCTCAGACGTTATCCTAAGTGGCTAGCAATGAATTTTACGGCAGCCATTTTATTTGTTAT
TGCTAACTTGGGTTTGCCGACGGTTCTTGCCAGAATGATTGATGAGGGAATAAACCGTGGTGATGTTGATAAGCTTTACG
CTTATGCTTGGGTCATGTTTGGTGTAGTTTTGACTGGGATTGTTGGTCGTATACTTCTGTCCTATGCGGTTGGTAAGTTG
ACCACTACTATGGTGCAAGTCATGCGTAATGACATTTATGCTAAGCTTCAGGAGTATTCCCACCACGAGTATGAGCAGAT
TGGGGTATCCTCTTTGGTGACTCGTATTACATCAGATGCTTTTGTGCTTATGCAGTTTGCGGATCAGGTTCTTAAGCTAG
GGGTTATCACTCCTTTGATGATGGTTTCCAGTGTCTTTTTGATTTTGACGACAAGTCCATCTTTGGCTTGGATTGTGGCA
ATCTCCTTACCTTTCCTAGCCGTAGTTGTCTGGTATGTGGCGGTAAAAACGCGTCCGCTTTCTGAAAAGCAACAGGCAAC
TCTCGACAAGATTAACCAGTATGCTCGTGAAAATCTGACTGGACTTCGTGTCATCCGTGCTTTCGCTAGAGAAGATTTTC
AAGAGAAGAAGTTCGCTTCTGAAAATGCTGTCTATGCGGATAATTCAAACAAACTTTTTAAATTGACTGGTTTGACCGAG
CCACTTTTTGTGCAAATCATCATAGCCATGATTGTGGCAATTGTTTGGTTTGCCCTTGAGCCATTAGGCTCTGGAAGTTT
GGCTATCGGTGACTTGGTTGCCTTTATTGAGTACAGCTTCCATGCACTATTGTCTTTCCTTTTCCTAGCCAATCTCTTTA
CCATGTATCCTCGTACAGCGGTGTCTAGTGAACGTCTGCAGGAAATTATGGACATGCCGATTTCTATCAATCCAAATGAA
GATGGCGTGACAGAAACCGAGACTAAGGGATATTTGGAATTTGACAATGTGACCTTTGCCTATCCCGGTGAAACTGAAAG
TCCTGTCCTACACAACATTTCTTTCAAGGCAAAACCTGGTGAAACCATTGCCTTTATTGGGTCTACGGGTTCAGGAAAAT
CATCACTTGTACAGTTGATTCCACGCTTTTATGATGTAACACTTGGACGCATTCTTGTTGATGGTGTAGATGTCCGTGAC
TACAATATTAAGGCTCTTCGTCGTAAGATTGGCTTTATTCCACAAAAAGCCCTACTCTTTACAGGGACTATCGGTGAAAA
TATCCGTTATGGTAAGGAAAATGCCAGTCATGAAGAATTGAATCAAGCTACTGATGTGGCTCAAGCCAAGGAATTTATCG
AAAGTAAGGAAGAACGTTATGATTCTCACTTGGCTGAGGGTGGTAGCAACCTTTCTGGTGGTCAGAAGCAGCGTTTGTCA
ATTGCACGTGCGGTGGTTAAACGTCCTGATCTTTATATCTTTGATGATTCCTTCTCTGCCTTGGACTACAAGACTGATGC
GACCTTGCGCCGTCGTCTGAAAGAAGTGACCCAGGATGCGACAGTCTTGATTGTGGCTCAACGTGTGGGGACTATCATGG
ATGCAGACCAGATTATCGTTCTTGATAAGGGTGAAATCGTTGGTCGTGGCCGTCATGAAGAGCTTATGGAAAGCAATGAC
ATTTACCGTGAAATTGCTAATTCACAATTGAATCAAAAGAGTCTTACGGAAGACTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(17-279)

ABC transporter (ABC_tran)

(350-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.662

92.042

0.365