Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   V6U68_RS00195 Genome accession   NZ_CP145866
Coordinates   24485..25258 (+) Length   257 a.a.
NCBI ID   WP_347093543.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 19485..30258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U68_RS00175 (V6U68_00175) mreD 19934..20458 (+) 525 WP_347093537.1 rod shape-determining protein MreD -
  V6U68_RS00180 (V6U68_00180) - 20543..22054 (+) 1512 WP_410531705.1 CHAP domain-containing protein -
  V6U68_RS00185 (V6U68_00185) - 22266..23231 (+) 966 WP_002886286.1 ribose-phosphate diphosphokinase -
  V6U68_RS00190 (V6U68_00190) - 23323..24498 (+) 1176 WP_347093541.1 pyridoxal phosphate-dependent aminotransferase -
  V6U68_RS00195 (V6U68_00195) recO 24485..25258 (+) 774 WP_347093543.1 DNA repair protein RecO Machinery gene
  V6U68_RS00200 (V6U68_00200) plsX 25470..26474 (+) 1005 WP_013989885.1 phosphate acyltransferase PlsX -
  V6U68_RS00205 (V6U68_00205) - 26474..26719 (+) 246 WP_013989886.1 phosphopantetheine-binding protein -
  V6U68_RS00210 (V6U68_00210) purC 26982..27689 (+) 708 WP_155198566.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29834.04 Da        Isoelectric Point: 4.9437

>NTDB_id=853791 V6U68_RS00195 WP_347093543.1 24485..25258(+) (recO) [Streptococcus salivarius strain KSS9]
MQKLESRGLVLFNRNYRENDKLVKIFTEQAGKRMFFVRGGGTGKLSAVIQPLTIAEFMMTVNDEGLSFIEDYSQAQSFKE
ITSDIFKLSYATYLAALTDATIADGVTDAQLFVFLEKTLELMEEGLDYEILTNIFEIQVLDRFGVRLNFHECVFCHRVGL
PFDFSFKFSGLLCPNHYVEDERRSHLDPNVPYLLDRFQGLSFEELRSISVKDDMKRKLRYFIDDLYDNYVGIHLKSKKFI
DNLNSWGHIMNKEDSAD

Nucleotide


Download         Length: 774 bp        

>NTDB_id=853791 V6U68_RS00195 WP_347093543.1 24485..25258(+) (recO) [Streptococcus salivarius strain KSS9]
ATGCAGAAGCTTGAGAGTAGAGGGCTTGTCCTCTTCAATCGTAATTATCGTGAGAATGATAAACTAGTTAAAATTTTTAC
CGAGCAAGCTGGTAAACGGATGTTTTTTGTTAGAGGTGGTGGGACAGGTAAATTAAGTGCTGTCATTCAACCTTTGACCA
TCGCTGAATTCATGATGACTGTAAATGATGAAGGTCTATCTTTCATAGAAGATTATAGCCAGGCACAATCCTTCAAGGAA
ATTACAAGCGATATTTTCAAGCTGTCTTATGCGACTTATTTGGCTGCATTGACAGATGCTACTATTGCTGATGGTGTGAC
AGATGCGCAATTATTTGTATTCTTGGAGAAGACGCTTGAATTAATGGAAGAAGGCTTGGATTATGAAATATTGACTAATA
TCTTTGAGATTCAGGTTTTAGACCGTTTCGGCGTACGCTTGAATTTTCACGAGTGTGTCTTTTGTCATCGTGTAGGACTT
CCTTTTGATTTCTCGTTTAAGTTCTCGGGGCTACTTTGTCCAAATCACTATGTAGAGGATGAAAGGCGTAGTCACTTGGA
CCCTAATGTTCCTTATCTTTTAGATCGTTTTCAGGGGCTTTCCTTTGAAGAATTGAGAAGCATATCTGTTAAGGATGACA
TGAAACGAAAGCTACGATATTTTATCGATGACCTCTATGATAATTATGTTGGAATACATCTTAAAAGTAAGAAGTTTATT
GATAATCTAAATTCTTGGGGCCATATTATGAATAAAGAAGATAGTGCTGACTAG

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

62.846

98.444

0.619