Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   V6U67_RS08340 Genome accession   NZ_CP145865
Coordinates   1827329..1830649 (-) Length   1106 a.a.
NCBI ID   WP_272125889.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1822329..1835649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U67_RS08330 (V6U67_08335) - 1822600..1823331 (+) 732 WP_002891763.1 DUF554 domain-containing protein -
  V6U67_RS08335 (V6U67_08340) rexA 1823686..1827339 (-) 3654 WP_410531177.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  V6U67_RS08340 (V6U67_08345) rexB 1827329..1830649 (-) 3321 WP_272125889.1 ATP-dependent nuclease subunit B Machinery gene
  V6U67_RS08345 (V6U67_08350) - 1830898..1832271 (-) 1374 WP_175061975.1 GHKL domain-containing protein -
  V6U67_RS08350 (V6U67_08355) - 1832306..1833616 (-) 1311 WP_014635015.1 hypothetical protein -
  V6U67_RS08355 (V6U67_08360) - 1833897..1835636 (-) 1740 WP_272125614.1 DUF6287 domain-containing protein -

Sequence

Protein


Download         Length: 1106 a.a.        Molecular weight: 126218.69 Da        Isoelectric Point: 4.8858

>NTDB_id=853764 V6U67_RS08340 WP_272125889.1 1827329..1830649(-) (rexB) [Streptococcus salivarius strain KSS8]
MKLLYTDMSQDLTEILTEQATSYAQKGKRVFYIAPNALSFEKERKVLEYLPQSASFEITVTRFTQMARYFILNTSNPKTQ
LDDTGLAMIFYKVLSHMGDDELKVYGRLRKDSNFINQLVDLYKELQQANMTVLDLQHLDQAEKQENLVRIFSAAQDLLLA
GDFDNQSKLSAFFKEIASGHLDKALSNTVLVIDGFTRFSAEEEALVTLLNDKCHQIVIGTYASQKAYRANFVYGNVYQAS
VDFLRTLAQTYKVTPDYVTTDKEGNPSFARISRLLESRHDFSTVDEQLTAQDKQALQVWEVVNQKEEVAQVAKSIRQLLA
DGKRYKDILVLLGDEESYKLQVGQIFRKFDIPYYFGKEETMSSHPLVQFVDSLERIKRYNYRAEDLLNLVKSGLYGGFAQ
EDLDLFEYYVNFADIKGRHKFLSDFTANSRDKYDLDQLNTLRSQLVEPLDKLLNSRKQKGSSLLKKLVVFLEAVQVPSQM
ASLTAKASEAEKEQNEQVWKAFTQLLEQVETIFGEETLSVDDFLSILRSGMLACDYRTVPATVDVVNVKKYDLIQPHSAP
YVFALGMTQSHFPKVGQNKSLLSDEERSRINEATDEHRSLDIVTQSNSQRGHFVAMSLFNAASEQLVLSQPQILNETQDD
MSVYLKELLDLGLPLVEKGRNRFEAKGDQIGNYKDLLSTVIALNSSHLDDDLDKETQTFWSVAVRYLRKRLDKEQVLIPN
VIDDVTTTKVDDQVMQLVFPGEEPLKLSASALTTFYNNQYLYFLRYVLGLEELESIHPDARHHGTYLHRVFERVMGDSSS
ENFDDKLEKAIAQTNQEQPFEILYTEDQESRLSRQILEDIARSTASVLRDNAAVKVEREEAKFDLLLANSIKITGIIDRV
DRLMDGALGVVDYKSGKNVFDIQKFYNGLSPQLVTYLEALRQTYKVDADQLFGAMYLHMQDPQLNLVQFGLDKLAAQANK
ELTYKGLFVASETEHLAGGNYDLQKTVTYDKEDLETLLDYNIKLFTDAAEIIRSGNFAVNPYTEDGKSVQGDQIKAITHF
EADRHMGQARKLLRLPSKGKKEAYLELMTKDEDKNQMQVAENIIPFLVTNQAVKADKKDQEDNHVD

Nucleotide


Download         Length: 3321 bp        

>NTDB_id=853764 V6U67_RS08340 WP_272125889.1 1827329..1830649(-) (rexB) [Streptococcus salivarius strain KSS8]
ATGAAATTACTTTATACGGATATGTCTCAGGATTTAACAGAAATTCTGACGGAGCAGGCAACCAGCTATGCTCAAAAGGG
AAAGAGGGTCTTTTATATTGCCCCTAATGCCCTGTCATTTGAGAAGGAGCGTAAGGTCTTGGAATACCTGCCTCAGTCAG
CATCCTTTGAGATTACGGTGACTCGTTTTACTCAGATGGCGAGATACTTTATTCTCAATACGAGCAACCCCAAAACGCAG
CTGGATGATACTGGTCTGGCCATGATTTTTTATAAGGTGTTGTCGCATATGGGCGATGATGAGCTCAAGGTTTATGGCCG
TTTGCGCAAGGATAGTAACTTTATTAATCAATTGGTAGACCTTTACAAAGAGTTGCAGCAGGCTAATATGACGGTTCTGG
ATTTGCAGCATTTGGATCAGGCAGAGAAACAAGAGAATTTGGTAAGGATTTTCAGTGCGGCTCAAGACCTCTTGTTGGCA
GGAGATTTTGACAATCAATCAAAACTCAGTGCCTTCTTCAAAGAGATTGCCTCAGGACATCTGGATAAGGCTCTAAGTAA
TACGGTTCTGGTCATTGATGGCTTTACGCGTTTCTCAGCTGAAGAGGAGGCTTTGGTTACCCTCTTAAATGATAAGTGCC
ACCAGATTGTCATTGGAACTTATGCCAGTCAAAAGGCTTATAGGGCTAATTTTGTCTATGGCAATGTTTATCAAGCTTCA
GTGGATTTTCTGAGAACTCTGGCTCAGACTTATAAGGTGACACCTGACTACGTGACGACAGACAAAGAGGGCAATCCTTC
TTTTGCACGTATTAGCCGTCTTTTGGAAAGCCGTCATGATTTTAGTACGGTAGATGAGCAGCTGACTGCTCAGGACAAGC
AAGCCTTGCAGGTCTGGGAAGTGGTCAACCAAAAGGAAGAGGTGGCTCAGGTTGCCAAGAGTATTCGTCAGTTGCTGGCG
GATGGCAAGCGCTACAAGGATATTTTGGTCTTGCTAGGTGATGAGGAGAGTTATAAGCTTCAGGTGGGGCAGATTTTCCG
AAAATTTGATATTCCCTATTATTTCGGGAAGGAAGAAACCATGTCTAGCCACCCTTTGGTGCAGTTTGTGGATTCGCTGG
AACGTATCAAGCGCTATAATTACCGTGCCGAGGATTTGCTTAATCTCGTAAAATCCGGTCTCTATGGTGGTTTTGCTCAA
GAGGACTTAGACCTTTTTGAGTATTATGTCAATTTTGCAGACATCAAGGGGCGTCACAAGTTCCTTTCTGATTTCACGGC
TAATAGTCGTGATAAGTATGATTTGGATCAGCTCAATACCTTACGGTCACAACTGGTAGAGCCCTTGGACAAGTTGCTTA
ACAGTCGCAAACAGAAGGGGTCTAGTCTGCTCAAGAAACTTGTGGTCTTTTTAGAGGCTGTGCAAGTGCCAAGTCAGATG
GCTAGTTTGACTGCCAAGGCCAGTGAAGCTGAAAAAGAGCAGAATGAACAGGTCTGGAAGGCCTTCACTCAACTCTTGGA
GCAGGTTGAGACTATTTTTGGGGAAGAAACTCTGTCAGTGGATGACTTTTTGTCTATCTTGCGTTCGGGCATGTTGGCCT
GTGATTACCGTACGGTCCCAGCTACTGTTGATGTGGTCAATGTGAAGAAATACGATTTGATTCAACCACACTCTGCTCCT
TATGTTTTTGCCTTGGGCATGACCCAGTCACATTTTCCAAAGGTAGGGCAAAATAAGAGTCTCCTGTCTGACGAGGAACG
TAGTCGTATCAATGAAGCTACGGATGAACACCGGAGTTTGGATATTGTTACGCAGAGTAATAGTCAGCGGGGGCATTTTG
TGGCCATGTCGCTTTTCAATGCGGCTAGTGAACAATTGGTGCTTAGTCAGCCACAAATTCTCAATGAGACGCAGGATGAC
ATGTCGGTTTATTTGAAGGAACTTCTTGACCTTGGTCTTCCTTTGGTTGAAAAGGGACGTAATCGTTTCGAGGCTAAGGG
TGACCAGATTGGGAACTATAAGGACCTCCTATCGACTGTCATTGCCCTTAACAGCAGCCATCTAGATGATGATTTGGATA
AGGAAACGCAGACGTTCTGGTCAGTTGCTGTGCGTTATCTCCGTAAGCGACTTGATAAGGAGCAAGTCTTGATTCCAAAT
GTGATTGACGATGTGACGACGACCAAGGTGGATGATCAGGTCATGCAGCTGGTCTTTCCGGGGGAAGAACCACTGAAATT
ATCAGCTTCGGCTCTGACGACCTTCTATAACAACCAATATCTTTATTTCTTGCGTTATGTTTTGGGACTTGAAGAGTTGG
AGTCCATCCATCCAGATGCCCGACACCACGGGACTTATTTACACCGTGTCTTTGAGCGTGTCATGGGTGATTCTTCGTCA
GAAAACTTCGATGATAAATTGGAAAAGGCTATTGCTCAGACCAATCAGGAACAACCCTTTGAAATTCTCTATACCGAGGA
CCAAGAGAGTCGCTTGTCTCGTCAGATCTTGGAAGATATCGCCCGTTCAACTGCCAGTGTTTTGCGTGACAATGCGGCCG
TTAAAGTTGAGCGTGAGGAAGCTAAGTTTGACTTGCTTTTAGCAAATAGCATCAAGATTACAGGGATTATTGACCGTGTG
GACCGTTTAATGGATGGGGCTCTGGGTGTCGTTGACTACAAATCAGGTAAAAATGTCTTTGACATTCAGAAATTCTACAA
TGGCCTTAGTCCGCAATTGGTGACCTATCTGGAGGCCCTTCGACAAACCTATAAGGTCGATGCTGACCAGCTTTTTGGTG
CCATGTATCTTCACATGCAGGACCCACAACTTAACCTAGTCCAGTTTGGTCTGGATAAGCTAGCAGCTCAGGCTAATAAG
GAATTGACCTATAAGGGGCTCTTTGTAGCTTCAGAAACAGAGCATCTGGCTGGTGGAAACTATGATTTACAAAAGACTGT
CACCTATGACAAGGAGGACCTAGAAACCTTGTTAGACTACAATATTAAGCTCTTTACAGATGCTGCTGAGATTATTCGAA
GTGGGAATTTTGCGGTCAATCCTTATACCGAGGATGGCAAGTCTGTTCAAGGGGATCAAATCAAGGCTATTACTCATTTT
GAGGCCGACCGCCACATGGGACAGGCTCGTAAACTCTTGCGTTTACCAAGTAAGGGCAAGAAGGAAGCCTATTTGGAGCT
GATGACAAAAGACGAGGACAAGAACCAGATGCAAGTTGCTGAAAATATCATCCCCTTTCTTGTCACCAATCAAGCTGTAA
AAGCAGACAAAAAAGACCAGGAGGACAACCATGTTGACTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(747-1023)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

43.526

98.463

0.429