Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE/comE1   Type   Regulator
Locus tag   V6U67_RS07530 Genome accession   NZ_CP145865
Coordinates   1661321..1662058 (-) Length   245 a.a.
NCBI ID   WP_022496803.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS8     
Function   activate transcription of early competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1656321..1667058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U67_RS07510 (V6U67_07520) - 1657646..1657894 (-) 249 WP_002884680.1 KH domain-containing protein -
  V6U67_RS07515 (V6U67_07525) rpsP 1657906..1658178 (-) 273 WP_002884675.1 30S ribosomal protein S16 -
  V6U67_RS07520 (V6U67_07530) - 1658341..1659720 (-) 1380 WP_272125640.1 hypothetical protein -
  V6U67_RS07525 (V6U67_07535) - 1659832..1661010 (-) 1179 WP_272125638.1 sensor histidine kinase -
  V6U67_RS07530 (V6U67_07540) comE/comE1 1661321..1662058 (-) 738 WP_022496803.1 LytR/AlgR family response regulator transcription factor Regulator
  V6U67_RS07535 (V6U67_07545) - 1662272..1663594 (+) 1323 WP_022496802.1 matrixin family metalloprotease -
  V6U67_RS07540 (V6U67_07550) tehB 1664374..1665252 (+) 879 WP_155123786.1 SAM-dependent methyltransferase TehB -
  V6U67_RS07545 (V6U67_07555) - 1665335..1666087 (-) 753 WP_155123785.1 DUF4767 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 28035.97 Da        Isoelectric Point: 4.7123

>NTDB_id=853751 V6U67_RS07530 WP_022496803.1 1661321..1662058(-) (comE/comE1) [Streptococcus salivarius strain KSS8]
MLSIIVLEDDALQRHRVSRLLDEAVEESKAVVDGITFYEQGQELLDADRGSGKSMVYLLDIDLKNQTKQGLDIGLEIRKE
DLKAQIAFVTAYSEFMPLTFRYKIQALDFVDKSMEDADLKRALVELLDFAYSQVEQETKAQSLTVKTDKNDVNIPYDDIL
YIETAPVPHKLIAHTKSNLVEFYGKIAEVAKLDDIFFQTHRSFVVNVSNVTSVDRTANMVFFEGDESCLLSRTRKKELLE
RLKNR

Nucleotide


Download         Length: 738 bp        

>NTDB_id=853751 V6U67_RS07530 WP_022496803.1 1661321..1662058(-) (comE/comE1) [Streptococcus salivarius strain KSS8]
ATGCTTTCTATTATCGTCCTTGAAGATGATGCCTTGCAGCGTCATCGTGTTAGCCGTTTATTGGACGAAGCAGTTGAGGA
GTCGAAGGCCGTTGTTGATGGGATTACCTTTTATGAGCAGGGGCAAGAATTGTTAGATGCTGATAGAGGTTCGGGTAAAT
CCATGGTTTATCTTTTGGATATTGACCTTAAAAATCAAACGAAGCAGGGACTAGATATTGGGCTTGAAATCCGTAAGGAA
GACTTGAAAGCACAAATCGCTTTTGTTACAGCCTACTCTGAGTTTATGCCCTTGACCTTCCGTTATAAGATTCAAGCTCT
GGACTTTGTTGATAAATCCATGGAAGATGCAGATCTTAAGAGAGCCTTGGTAGAACTTTTAGATTTTGCGTATTCGCAGG
TTGAGCAAGAAACCAAGGCACAGAGTCTGACGGTGAAAACGGATAAAAATGATGTTAATATTCCTTATGATGACATTTTA
TACATTGAAACAGCCCCTGTGCCACATAAGTTGATCGCTCACACCAAGTCAAATCTAGTAGAATTCTATGGAAAAATTGC
AGAAGTAGCGAAATTGGATGATATTTTCTTCCAAACGCATCGCTCTTTTGTTGTCAATGTGAGTAATGTGACAAGTGTGG
ATCGTACGGCTAATATGGTCTTCTTTGAGGGAGACGAGTCATGCCTCCTCTCGCGGACACGTAAAAAGGAACTTTTGGAA
CGATTGAAAAATCGTTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-123)

LytTr DNA-binding domain (LytTR)

(152-242)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE/comE1 Streptococcus equinus JB1

37.037

99.184

0.367