Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   V6U67_RS05125 Genome accession   NZ_CP145865
Coordinates   1062637..1063707 (+) Length   356 a.a.
NCBI ID   WP_201712143.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1057637..1068707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U67_RS05110 (V6U67_05115) glgP 1057741..1060002 (+) 2262 WP_410531298.1 glycogen/starch/alpha-glucan family phosphorylase -
  V6U67_RS05115 (V6U67_05120) - 1060114..1061253 (-) 1140 WP_241502335.1 hypothetical protein -
  V6U67_RS05120 (V6U67_05125) - 1061362..1062351 (+) 990 WP_048675812.1 lipoate--protein ligase -
  V6U67_RS05125 (V6U67_05130) xerS 1062637..1063707 (+) 1071 WP_201712143.1 tyrosine recombinase XerS Machinery gene
  V6U67_RS05130 (V6U67_05135) - 1063871..1066411 (-) 2541 WP_272125787.1 M1 family metallopeptidase -
  V6U67_RS05135 (V6U67_05140) phoU 1066545..1067198 (-) 654 WP_195187534.1 phosphate signaling complex protein PhoU -
  V6U67_RS05140 (V6U67_05145) pstB 1067227..1067985 (-) 759 WP_164331992.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41354.45 Da        Isoelectric Point: 9.3734

>NTDB_id=853728 V6U67_RS05125 WP_201712143.1 1062637..1063707(+) (xerS) [Streptococcus salivarius strain KSS8]
MKRELLLEKIEEYKALMPWFVLEYYQSKLSVPYSFTTLYEYLKEYKRFFDWLIDSGISDADDIASIDIKTLENLTKKDME
SFVLYLRERPSLNTYSKKQGVSQTTINRTLSALSSLYKYLTEEVEGPDGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETMEFLDYVENEYEVKLSNRAKSSFYKNKERDLAIIALLLASGVRLSEAVNLDLKDINLKMMVIDVTRKGGKRDS
VNVASFAKPYLETYLSIRDKRYKAEKQDVALFLTEYRGVPNRIDASSIEKMVAKYSQDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDSL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=853728 V6U67_RS05125 WP_201712143.1 1062637..1063707(+) (xerS) [Streptococcus salivarius strain KSS8]
ATGAAACGTGAACTCTTGCTCGAAAAAATTGAAGAATACAAAGCTCTTATGCCCTGGTTTGTTCTGGAGTATTATCAATC
GAAACTTTCGGTACCGTATTCTTTTACAACCTTATACGAATACCTTAAGGAATATAAACGCTTTTTTGACTGGTTGATTG
ACTCAGGTATTTCAGATGCTGATGATATTGCCTCAATTGACATCAAAACCTTGGAAAATCTAACTAAAAAAGATATGGAG
TCATTTGTCCTTTATCTACGTGAACGTCCATCTTTGAATACCTATTCCAAGAAACAGGGTGTCTCTCAAACGACCATTAA
TCGCACACTTTCAGCTCTATCTAGTCTCTATAAGTATTTAACCGAGGAGGTCGAGGGTCCTGACGGTGAGCCATATTTCT
ATCGTAACGTCATGAAAAAAGTTTCTACTAAGAAAAAGAAAGAAACTCTAGCTGCACGTGCTGAGAATATCAAACAGAAA
CTCTTTCTTGGCGATGAAACCATGGAATTCCTTGATTATGTAGAAAATGAATACGAAGTCAAGCTCTCAAATCGCGCTAA
ATCTTCGTTTTATAAGAATAAAGAACGTGATTTAGCTATTATTGCCTTGCTGCTGGCTTCAGGTGTTCGACTTTCCGAGG
CTGTTAATCTGGATCTTAAAGATATCAATCTAAAAATGATGGTCATTGATGTTACTCGAAAAGGTGGCAAACGTGACTCC
GTTAATGTAGCAAGTTTTGCAAAACCCTATCTTGAAACTTATCTCAGTATACGTGATAAACGCTATAAGGCTGAAAAGCA
AGATGTTGCCCTCTTTTTAACGGAATATCGAGGGGTCCCAAACCGTATTGATGCTTCGAGTATCGAAAAAATGGTTGCCA
AATATTCTCAGGATTTCAAGATACGTGTGACTCCTCATAAACTTCGACATACTCTGGCAACACGTCTTTATGATGCTACC
AAGTCTCAAGTTTTAGTGAGTCATCAACTTGGCCATGCTTCCACTCAGGTTACTGATCTATATACGCATATTGTTAATGA
TGAACAAAAAAATGCTCTAGACAGTTTATAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(183-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

83.708

100

0.837