Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   V6U67_RS04265 Genome accession   NZ_CP145865
Coordinates   862763..864964 (+) Length   733 a.a.
NCBI ID   WP_037611002.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 857763..869964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U67_RS04235 (V6U67_04235) hflX 858237..859475 (+) 1239 WP_155211858.1 GTPase HflX -
  V6U67_RS04240 (V6U67_04240) - 859468..860109 (+) 642 WP_272126407.1 cystathionine beta-lyase -
  V6U67_RS04245 (V6U67_04245) rnz 860141..861070 (+) 930 WP_272126409.1 ribonuclease Z -
  V6U67_RS04250 (V6U67_04250) - 861070..861837 (+) 768 WP_022496515.1 SDR family NAD(P)-dependent oxidoreductase -
  V6U67_RS04255 (V6U67_04255) - 861909..862046 (+) 138 Protein_791 class I SAM-dependent methyltransferase -
  V6U67_RS04260 (V6U67_04260) - 862048..862452 (+) 405 WP_022496514.1 GNAT family N-acetyltransferase -
  V6U67_RS04265 (V6U67_04265) recJ 862763..864964 (+) 2202 WP_037611002.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  V6U67_RS04270 (V6U67_04270) - 865083..865601 (+) 519 WP_002884049.1 adenine phosphoribosyltransferase -
  V6U67_RS04275 (V6U67_04275) metA 865774..866718 (+) 945 WP_022496512.1 homoserine O-succinyltransferase -
  V6U67_RS04280 (V6U67_04280) - 866791..867489 (+) 699 WP_004182658.1 DnaD domain-containing protein -
  V6U67_RS04285 (V6U67_04285) nth 867489..868133 (+) 645 WP_022496511.1 endonuclease III -
  V6U67_RS04290 (V6U67_04290) - 868261..869022 (+) 762 WP_022496510.1 hypothetical protein -

Sequence

Protein


Download         Length: 733 a.a.        Molecular weight: 82051.18 Da        Isoelectric Point: 4.3071

>NTDB_id=853720 V6U67_RS04265 WP_037611002.1 862763..864964(+) (recJ) [Streptococcus salivarius strain KSS8]
MITSTYDWKINTKEPDAGFFKLAKEHGLAETAAKIAYERGVTTAEALEDFLKADLSHLHDPYLLHDMDKAVARIRQAIEN
YEQILVYGDYDADGMTSASIVKEALEMMGAEARVYLPNRFTDGYGPNESVYKYFIEQEGISLIVTVDNGVAGNEAIAYAQ
EQGVDVIVTDHHSMPAQLPDAYAIVHPEHPDADYPFKYLAGCGVAFKLATALLETIPTEMLDLVAIGTIADMVSLTDENR
IMVKVGLEILKTTERIGLQELLRISDVDPTTISEETVGFKLAPQLNALGRLDDPNPAIELLTGFDDEEAQAIALEINAKN
EERKEVVQKIFDEAMTMVDLDKPVQVLAKEGWHPGVLGIVAGRIMEQISQTVVVLNIEDGLAKGSARSLESINIFHALDD
HRDIFTAFGGHAGAAGMTLPEENLGQLSDILCSYVYDNDIDTSAKNTLNLDEELQLSELSLDTIKSLEKLAPFGMDNKKP
VFWLHDITVTQARTMGQNGAHLKFKVKQGKDSFDVVAFNKGNLLQEFQQAQGLELAVTLSVNVWNGQTTLQLMLEDARVD
GVQLFDFRSKNMALPEGVPSVEEAADTEPAVVLNTLPESATELKEWFEGKDFQAIYFKNSIKEAYYLTGYGTREQFARLY
KTIYQFPEFDVRYKLDELSHYLKIDKILLIKMIQIFDELDFVTIDNGVMTVNKEAEKREIEDSQIFQDLKRLVKFQELMA
LGTPQEIYDWLYK

Nucleotide


Download         Length: 2202 bp        

>NTDB_id=853720 V6U67_RS04265 WP_037611002.1 862763..864964(+) (recJ) [Streptococcus salivarius strain KSS8]
ATGATTACATCAACGTATGATTGGAAAATAAACACAAAAGAGCCAGATGCTGGCTTTTTTAAACTTGCCAAAGAACATGG
ACTGGCAGAAACAGCAGCCAAGATTGCTTATGAACGTGGCGTGACGACAGCAGAAGCCCTTGAAGACTTTCTTAAGGCTG
ATTTATCACATCTTCATGATCCTTATCTTCTTCATGATATGGACAAGGCAGTAGCTAGAATTCGTCAGGCCATTGAAAAT
TACGAGCAAATCTTAGTCTATGGAGATTATGATGCGGATGGGATGACGTCGGCATCGATTGTCAAGGAAGCCCTTGAAAT
GATGGGCGCTGAAGCTCGAGTTTATTTGCCTAACCGCTTTACAGATGGTTATGGGCCAAATGAAAGTGTCTACAAGTATT
TCATTGAGCAGGAAGGCATTTCACTCATTGTTACAGTGGATAATGGGGTTGCGGGAAATGAAGCTATTGCTTATGCGCAA
GAGCAAGGTGTGGACGTTATCGTTACAGACCACCATAGTATGCCGGCACAGCTTCCAGATGCCTACGCCATTGTCCATCC
AGAGCATCCAGATGCCGATTATCCTTTTAAGTATTTGGCAGGATGTGGTGTAGCTTTCAAATTGGCAACTGCCCTCCTTG
AAACTATTCCTACAGAGATGTTGGACTTGGTAGCCATTGGTACCATTGCTGATATGGTTAGCTTAACGGATGAAAATCGT
ATTATGGTCAAGGTCGGCCTGGAAATTCTCAAGACTACTGAGCGTATCGGGCTTCAAGAATTGCTCCGCATTTCAGATGT
AGACCCAACAACGATTTCCGAAGAAACGGTAGGCTTCAAACTGGCTCCTCAACTCAATGCCTTGGGTCGCTTAGATGACC
CAAATCCAGCCATTGAACTGCTGACCGGATTTGACGATGAGGAAGCTCAAGCCATTGCTCTGGAAATCAATGCTAAAAAT
GAAGAACGTAAGGAAGTTGTTCAAAAAATCTTTGATGAAGCTATGACCATGGTAGACTTGGACAAACCAGTTCAGGTTTT
GGCCAAGGAAGGTTGGCATCCTGGCGTTCTAGGTATTGTGGCTGGGCGCATCATGGAACAAATCAGCCAGACAGTAGTGG
TTTTAAATATTGAAGATGGCTTGGCTAAGGGTTCGGCCCGTAGTTTGGAATCAATCAATATCTTCCATGCCCTTGATGAC
CACCGAGATATCTTTACTGCATTTGGAGGACATGCTGGAGCGGCGGGGATGACCCTTCCAGAGGAAAATCTTGGTCAACT
CTCAGATATTTTGTGTAGTTATGTCTACGATAATGACATTGATACAAGCGCCAAAAATACACTTAATTTAGACGAGGAGC
TTCAACTCAGCGAGCTTAGCTTGGATACTATTAAGAGTCTAGAAAAACTAGCACCTTTTGGTATGGATAATAAAAAGCCA
GTCTTTTGGCTACATGATATTACCGTTACTCAAGCTAGGACAATGGGACAAAATGGGGCCCATCTTAAGTTTAAGGTTAA
GCAAGGTAAGGATAGCTTTGACGTTGTCGCTTTTAATAAAGGTAATCTACTTCAAGAATTCCAACAGGCTCAGGGTTTGG
AATTGGCAGTGACCTTGTCTGTTAATGTTTGGAATGGTCAGACAACGCTACAGCTCATGCTAGAAGATGCGCGTGTGGAT
GGTGTTCAATTATTTGATTTCCGCTCAAAAAATATGGCACTGCCTGAAGGCGTACCATCGGTAGAAGAAGCAGCAGACAC
AGAGCCTGCGGTTGTCCTCAACACCCTACCTGAATCAGCGACAGAATTAAAAGAGTGGTTTGAAGGTAAAGATTTTCAGG
CTATCTATTTTAAAAATAGCATTAAGGAAGCCTATTATCTGACAGGTTATGGAACAAGAGAGCAATTTGCAAGGCTCTAT
AAAACCATTTACCAATTCCCAGAATTCGATGTTCGCTATAAATTGGATGAACTCAGTCATTACCTTAAAATCGACAAGAT
TCTCCTGATTAAGATGATTCAAATCTTTGATGAATTAGATTTTGTGACGATTGATAATGGTGTTATGACAGTCAATAAAG
AAGCTGAAAAACGTGAGATTGAGGACAGTCAGATTTTCCAAGATCTGAAACGACTAGTTAAGTTCCAAGAACTCATGGCT
CTGGGAACACCACAGGAAATTTATGATTGGCTGTATAAGTAG

Domains

Predicted by InterProScan.

DHH family (DHH)

(83-228)

DHHA1 domain (DHHA1)

(317-431)

RecJ OB domain (RecJ_OB)

(451-556)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(582-731)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

68.207

100

0.685
  recJ Bacillus subtilis subsp. subtilis str. 168

38.186

100

0.408