Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   V6U67_RS02640 Genome accession   NZ_CP145865
Coordinates   522134..523870 (+) Length   578 a.a.
NCBI ID   WP_272126090.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS8     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 517134..528870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U67_RS02615 (V6U67_02620) - 517520..518773 (+) 1254 WP_022496063.1 efflux RND transporter periplasmic adaptor subunit -
  V6U67_RS02620 (V6U67_02625) - 518784..519470 (+) 687 WP_155209737.1 ABC transporter ATP-binding protein -
  V6U67_RS02625 (V6U67_02630) - 519480..520688 (+) 1209 WP_037611752.1 ABC transporter permease -
  V6U67_RS02630 (V6U67_02635) rplJ 520979..521482 (+) 504 WP_004183007.1 50S ribosomal protein L10 -
  V6U67_RS02635 (V6U67_02640) rplL 521558..521926 (+) 369 WP_002886110.1 50S ribosomal protein L7/L12 -
  V6U67_RS02640 (V6U67_02645) rcrP 522134..523870 (+) 1737 WP_272126090.1 ABC transporter ATP-binding protein Regulator
  V6U67_RS02645 (V6U67_02650) rcrQ 523883..525670 (+) 1788 WP_272126092.1 ABC transporter ATP-binding protein Regulator
  V6U67_RS02650 (V6U67_02655) queA 525768..526811 (-) 1044 WP_272126094.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  V6U67_RS02655 (V6U67_02660) - 526962..527663 (+) 702 WP_272126096.1 glucosamine-6-phosphate deaminase -
  V6U67_RS02660 (V6U67_02665) - 527853..528836 (+) 984 WP_272126098.1 rhodanese-related sulfurtransferase -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 64873.87 Da        Isoelectric Point: 5.5902

>NTDB_id=853709 V6U67_RS02640 WP_272126090.1 522134..523870(+) (rcrP) [Streptococcus salivarius strain KSS8]
MAYIWSYLRRYPKWLAMNFTAAILFVIANLGLPTVLARMIDEGINRGDVDKLYAYAWVMFGVVLTGIVGRILLSYAVGKL
TTTMVQVMRNDIYAKLQEYSHHEYEQIGVSSLVTRITSDAFVLMQFAEQILKMGVITPLMMVSSVFLILTTSPSLAWIVA
ISLPFLAVVVWYVAVKTRPLSEKQQATLDKINQYARENLTGLRVIRAFAREDFQEKKFASENAVYADNSNKLFKLTGLTE
PLFVQIIIAMIVAIVWFALEPLGSGTLAIGDLVAFIEYSFHALLSFLFLANLFTMYPRTAVSSERLQEIMDMPISINPNE
DGVTETETKGYLEFDNVTFAYPGETESPVLHNISFKAKPGETIVFIGSTGSGKSSLVQLIPRFYDVTLGRILVDGVDVRD
YNLKALRRKIGFIPQKALLFTGTIGENIRYGKENASHEELNQATDVAQAKEFIDSKEERYDSHLAEGGSNLSGGQKQRLS
IARAVVKRPDLYIFDDSFSALDYKTDATLRRRLKEVTQDATVLIVAQRVGTIMDADQIIVLDKGEIVGRGRHEELMESNE
IYREIANSQLNQKSLTED

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=853709 V6U67_RS02640 WP_272126090.1 522134..523870(+) (rcrP) [Streptococcus salivarius strain KSS8]
ATGGCTTATATTTGGTCTTATCTCAGACGTTATCCTAAGTGGCTAGCAATGAATTTTACGGCGGCCATTTTATTTGTTAT
TGCTAACTTGGGTTTGCCGACGGTTCTTGCCAGAATGATTGATGAGGGAATAAACCGTGGTGATGTTGATAAGCTTTACG
CTTATGCTTGGGTCATGTTTGGTGTAGTTTTGACTGGGATTGTTGGTCGTATACTTCTGTCCTATGCAGTTGGTAAGTTG
ACCACTACTATGGTGCAAGTCATGCGTAATGACATTTATGCTAAGCTTCAGGAGTATTCCCACCACGAGTACGAGCAGAT
TGGGGTATCCTCTTTGGTGACTCGTATTACATCTGATGCTTTTGTTCTTATGCAATTTGCAGAACAGATTCTTAAGATGG
GTGTCATTACTCCTCTGATGATGGTTTCCAGTGTCTTCTTGATTTTGACGACAAGTCCATCTTTGGCTTGGATTGTGGCA
ATTTCCTTACCTTTCCTAGCCGTAGTAGTCTGGTATGTAGCGGTAAAAACGCGTCCGCTTTCTGAGAAGCAACAGGCAAC
ACTCGACAAGATTAACCAGTACGCTCGTGAAAATCTGACTGGACTTCGTGTCATCCGAGCTTTCGCTAGAGAAGATTTTC
AAGAGAAGAAGTTTGCTTCTGAAAATGCCGTCTATGCGGATAATTCAAACAAGCTCTTTAAATTAACTGGTTTGACCGAG
CCACTTTTTGTGCAAATCATCATCGCCATGATTGTGGCAATTGTTTGGTTTGCTCTTGAGCCATTAGGTTCTGGGACGTT
GGCAATCGGGGATTTGGTTGCCTTTATTGAGTACAGTTTCCATGCGCTATTGTCTTTCCTTTTCCTAGCCAACCTCTTTA
CCATGTATCCTCGTACGGCGGTATCTAGTGAACGTCTGCAGGAAATTATGGATATGCCTATTTCTATCAATCCAAATGAA
GATGGGGTGACAGAGACTGAGACTAAGGGATATTTGGAGTTTGACAATGTGACCTTTGCCTATCCTGGTGAAACTGAGAG
TCCTGTCCTACACAATATTTCTTTCAAGGCTAAACCAGGTGAAACCATTGTCTTTATCGGATCTACGGGTTCAGGGAAAT
CATCACTTGTGCAGTTGATTCCACGCTTTTATGATGTAACACTTGGACGCATTCTTGTTGATGGTGTGGATGTCCGTGAC
TATAATCTGAAGGCTCTGCGTCGTAAGATTGGCTTTATTCCACAAAAAGCCCTGCTCTTTACAGGAACCATCGGTGAAAA
TATCCGTTATGGTAAGGAAAATGCCAGTCATGAAGAATTGAATCAAGCTACGGATGTCGCTCAAGCTAAGGAATTTATTG
ATAGTAAGGAAGAACGCTACGATTCTCACTTGGCTGAGGGTGGTAGCAACCTTTCTGGGGGACAGAAGCAGCGTTTGTCA
ATTGCACGTGCTGTGGTTAAACGTCCTGATCTTTACATCTTTGATGATTCCTTCTCTGCCTTGGACTACAAGACTGATGC
GACCTTGCGCCGTCGTCTGAAAGAAGTGACCCAGGATGCGACAGTCTTGATTGTGGCTCAACGTGTGGGGACTATCATGG
ATGCAGACCAGATTATCGTTCTTGATAAGGGTGAAATCGTTGGTCGTGGCCGTCACGAAGAGCTTATGGAAAGCAATGAG
ATTTACCGTGAAATTGCTAATTCACAATTGAATCAAAAGAGTCTTACGGAAGACTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(17-279)

ABC transporter (ABC_tran)

(350-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.587

92.215

0.365