Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   V6U66_RS09345 Genome accession   NZ_CP145864
Coordinates   2001973..2004798 (-) Length   941 a.a.
NCBI ID   WP_045771665.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1996973..2009798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U66_RS09305 (V6U66_09285) - 1997061..1997450 (-) 390 WP_045769163.1 Asp23/Gls24 family envelope stress response protein -
  V6U66_RS09310 (V6U66_09290) efp 1997521..1998081 (-) 561 WP_002884532.1 elongation factor P -
  V6U66_RS09315 (V6U66_09295) - 1998197..1998652 (-) 456 WP_002884736.1 deoxycytidylate deaminase -
  V6U66_RS09320 (V6U66_09300) - 1998671..1999732 (-) 1062 WP_049527446.1 M24 family metallopeptidase -
  V6U66_RS09325 (V6U66_09305) - 1999947..2000807 (-) 861 WP_045769129.1 thioredoxin family protein -
  V6U66_RS09330 (V6U66_09310) - 2001075..2001275 (-) 201 WP_013991177.1 hypothetical protein -
  V6U66_RS09335 (V6U66_09315) - 2001312..2001461 (-) 150 WP_013991178.1 hypothetical protein -
  V6U66_RS09340 (V6U66_09320) - 2001636..2001878 (-) 243 WP_045771664.1 DUF3923 family protein -
  V6U66_RS09345 (V6U66_09325) uvrA 2001973..2004798 (-) 2826 WP_045771665.1 excinuclease ABC subunit UvrA Machinery gene
  V6U66_RS09350 (V6U66_09330) - 2005094..2006038 (+) 945 WP_013991181.1 magnesium transporter CorA family protein -
  V6U66_RS09355 (V6U66_09335) - 2006108..2006779 (+) 672 WP_013991182.1 DUF1129 domain-containing protein -
  V6U66_RS09360 (V6U66_09340) - 2006890..2007771 (+) 882 WP_004183473.1 DUF4300 family protein -
  V6U66_RS09365 (V6U66_09345) rpsR 2007895..2008134 (-) 240 WP_000068665.1 30S ribosomal protein S18 -
  V6U66_RS09370 (V6U66_09350) ssb 2008176..2008694 (-) 519 WP_002891844.1 single-stranded DNA-binding protein Machinery gene
  V6U66_RS09375 (V6U66_09355) rpsF 2008706..2008996 (-) 291 WP_045771666.1 30S ribosomal protein S6 -

Sequence

Protein


Download         Length: 941 a.a.        Molecular weight: 103561.37 Da        Isoelectric Point: 5.6763

>NTDB_id=853654 V6U66_RS09345 WP_045771665.1 2001973..2004798(-) (uvrA) [Streptococcus salivarius strain KSS7]
MQDKLVIHGARAHNLKNIDVEIPRDKLVVVTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGNMEKPDVDSIDGL
SPAISIDQKTTSKNPRSTVGTATEINDYLRLLYARVGVPYCPNGHGAIQSSSVEQIVDEVLALPERTRMQILAPIVRRRK
GQHKAVFDRVQKDGYVRVRVDGEIYDVTEVPELSKSKMHNIEVVVDRLVNKDGIRSRLFDSVEAALRLADGYLIVDTMDD
NELLYSEHYSCPVCGFTVPELEPRLFSFNAPFGSCPTCDGLGNKLEVDMDLVIPDASKTLREGALAPWNPISSNYYPAML
EQAMEQFGVDMDTPFEDLKKEEQDLILYGSGDREFHFHYVNDFGGVRDIDIPFEGVVTNINRRYHETNSDFTRNVMRGYM
NELSCPTCHGYRLNEAALSVRVGGENGLNIGQISDLSISDHLKEIDNLELGENEGVIARPIVKEIKDRLTFLNNVGLNYL
TLSRMAGTLSGGESQRIRLATQIGSNLSGVLYVLDEPSIGLHQRDNDRLISSLKKMRDLGNTLIVVEHDEDTMREADWLI
DVGPGAGAFGGQIMASGTPEEVAKNKKSITGQYLSGAKSIPVPTERRVGNGRFIEVTGASENNLKNVSVKFPLGKLIAVT
GVSGSGKSTLVNGILKKKIAQELNRNSEKPGKHKSVTGIEHIERLIDIDQSPIGRTPRSNPATYTGVFDDIRDLFAQTNE
AKIRGYKKGRFSFNVKGGRCEACSGDGIIKIEMHFLPDVYVPCEVCHGTRYNSETLEVRYKGKNIAEILDMTVDDAVDFF
AAIPKIARKVQTIKDVGLGYVTLGQPATTLSGGEAQRMKLASELHKRSTGKSFYILDEPTTGLHTDDIARLLKVLQRFAD
DGNTVLVIEHNLDVIKTADHIIDLGPEGGVGGGTIVATGTPEEVAAVSESYTGQYLKEKLT

Nucleotide


Download         Length: 2826 bp        

>NTDB_id=853654 V6U66_RS09345 WP_045771665.1 2001973..2004798(-) (uvrA) [Streptococcus salivarius strain KSS7]
ATGCAAGATAAGTTAGTGATTCATGGAGCAAGAGCTCACAATTTAAAAAATATCGATGTGGAGATTCCACGTGATAAACT
GGTGGTGGTGACGGGCTTGTCAGGTTCTGGTAAGTCTTCTTTGGCCTTTGATACCATCTATGCTGAGGGGCAACGTCGCT
ATGTGGAAAGTCTCTCAGCCTATGCTCGCCAGTTTTTGGGAAATATGGAGAAACCTGATGTGGACTCGATTGATGGTTTG
AGTCCTGCCATCTCCATTGACCAGAAAACAACAAGCAAAAACCCTCGTTCGACGGTCGGAACGGCAACAGAGATTAATGA
CTATCTTCGTCTCCTTTATGCGCGTGTGGGTGTTCCCTATTGTCCTAATGGTCATGGCGCTATTCAGTCATCCTCTGTAG
AACAGATTGTGGACGAGGTTCTAGCTCTTCCTGAGCGTACGCGTATGCAGATTTTAGCGCCAATTGTTCGTCGTAGAAAA
GGGCAACACAAGGCCGTTTTTGATCGTGTGCAGAAGGACGGTTATGTTCGTGTTCGTGTAGATGGTGAGATTTACGATGT
CACAGAAGTGCCAGAGTTGTCTAAGTCTAAGATGCATAATATCGAAGTGGTTGTGGACCGCTTGGTGAATAAGGATGGTA
TCCGTAGTCGTCTCTTTGATTCGGTGGAGGCGGCCCTACGTTTAGCAGATGGCTACTTGATTGTGGATACTATGGATGAT
AATGAGCTGCTTTACTCAGAACATTATTCTTGTCCGGTTTGTGGCTTCACAGTGCCAGAGTTGGAACCTCGTCTCTTTTC
ATTCAATGCGCCATTCGGCTCTTGTCCGACCTGTGATGGTTTGGGTAATAAACTGGAAGTTGATATGGATTTGGTTATCC
CTGATGCTAGTAAGACCTTACGTGAAGGTGCTCTGGCGCCTTGGAATCCTATTTCGTCCAACTACTATCCAGCCATGCTT
GAGCAGGCTATGGAGCAGTTCGGCGTGGATATGGATACGCCATTTGAAGATCTTAAAAAAGAAGAACAAGATTTGATTCT
CTACGGATCTGGGGATCGTGAATTCCATTTCCATTATGTTAATGATTTTGGTGGGGTGCGTGATATTGACATTCCTTTTG
AAGGGGTTGTGACTAATATCAATCGTCGCTATCACGAGACCAATAGTGATTTCACTCGCAATGTTATGCGAGGTTATATG
AATGAGTTGTCATGTCCAACTTGTCATGGCTATCGTCTTAACGAAGCAGCACTCTCAGTTCGTGTTGGTGGTGAGAATGG
TCTCAATATTGGTCAAATCTCTGATTTGTCTATTTCAGATCATCTTAAGGAAATCGATAACCTTGAATTAGGTGAAAACG
AGGGAGTGATCGCTCGTCCAATTGTTAAGGAAATCAAGGATCGCTTGACTTTCCTAAATAATGTAGGTCTTAATTATTTG
ACTCTCTCTCGTATGGCTGGAACTCTTTCAGGTGGTGAGAGTCAGCGTATCCGTTTGGCGACACAGATTGGCTCTAACCT
TTCTGGAGTCCTATATGTTTTGGATGAGCCTTCTATTGGGCTTCATCAGCGTGACAATGATCGCTTGATTTCAAGTCTTA
AAAAGATGCGTGACCTTGGCAATACCTTGATTGTGGTAGAGCATGATGAAGATACCATGCGTGAGGCTGACTGGCTTATC
GATGTGGGACCTGGTGCTGGTGCCTTTGGTGGTCAAATCATGGCCTCAGGAACCCCAGAGGAAGTGGCTAAGAACAAGAA
GTCAATCACTGGGCAATATCTGTCAGGTGCTAAATCAATTCCTGTACCGACGGAACGTCGTGTAGGTAATGGTCGTTTTA
TCGAGGTTACAGGAGCTAGCGAAAATAACCTTAAGAATGTATCTGTTAAGTTTCCACTTGGGAAGTTGATTGCAGTCACA
GGTGTTTCTGGTTCAGGAAAATCGACTTTGGTTAACGGAATTCTCAAGAAAAAAATTGCCCAAGAGCTCAATCGCAATAG
TGAGAAGCCAGGTAAACACAAATCGGTGACAGGAATCGAGCATATCGAGCGATTGATTGATATTGACCAAAGTCCAATTG
GGCGTACACCTCGTTCTAATCCAGCGACTTACACAGGCGTCTTTGACGATATTCGTGATCTTTTTGCCCAAACCAATGAG
GCCAAGATTCGAGGTTACAAGAAGGGGCGTTTCTCTTTCAATGTCAAGGGTGGCCGTTGTGAAGCCTGCTCTGGTGATGG
TATTATCAAGATTGAGATGCACTTTTTGCCGGATGTTTATGTACCTTGTGAGGTTTGTCATGGCACACGCTATAATTCTG
AGACCCTAGAGGTTCGTTATAAGGGGAAAAATATTGCGGAGATTCTGGATATGACAGTTGATGACGCAGTTGACTTCTTT
GCGGCTATTCCTAAGATTGCTCGTAAGGTGCAGACGATCAAGGATGTGGGGCTTGGGTATGTGACCTTGGGACAACCAGC
AACAACCCTATCAGGTGGAGAAGCTCAACGTATGAAGCTGGCTAGTGAGTTGCACAAACGCTCTACTGGGAAGTCTTTCT
ACATTCTGGATGAACCGACGACTGGTCTCCATACAGATGACATTGCACGTCTTTTGAAGGTGCTTCAGCGTTTTGCGGAT
GATGGCAACACTGTTCTCGTGATTGAGCACAATCTGGATGTTATCAAGACCGCAGACCATATCATTGATTTGGGTCCTGA
AGGCGGTGTCGGTGGAGGTACTATTGTTGCTACAGGGACTCCAGAAGAGGTAGCAGCTGTTTCAGAAAGTTATACAGGAC
AATATTTGAAAGAAAAATTGACATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(624-860)

UvrA DNA-binding domain (UvrA_DNA-bind)

(288-396)

UvrA interaction domain (UvrA_inter)

(132-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

85.426

99.894

0.853
  uvrA Streptococcus pneumoniae TIGR4

85.426

99.894

0.853
  uvrA Streptococcus pneumoniae D39

85.426

99.894

0.853