Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   V6U66_RS08050 Genome accession   NZ_CP145864
Coordinates   1740080..1742065 (-) Length   661 a.a.
NCBI ID   WP_049553888.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1735080..1747065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U66_RS08020 (V6U66_08010) rsmI 1736299..1737165 (-) 867 WP_049553887.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  V6U66_RS08025 (V6U66_08015) yabA 1737168..1737488 (-) 321 WP_002887582.1 DNA replication initiation control protein YabA -
  V6U66_RS08030 (V6U66_08020) yaaT 1737475..1738281 (-) 807 WP_049529414.1 regulatory iron-sulfur-containing complex subunit RicT Regulator
  V6U66_RS08035 (V6U66_08025) - 1738278..1739153 (-) 876 WP_049529415.1 DNA polymerase III subunit delta' -
  V6U66_RS08040 (V6U66_08030) tmk 1739162..1739791 (-) 630 WP_045769039.1 dTMP kinase -
  V6U66_RS08050 (V6U66_08040) recP/tkt 1740080..1742065 (-) 1986 WP_049553888.1 transketolase Machinery gene
  V6U66_RS08055 (V6U66_08045) tpiA 1742325..1743083 (-) 759 WP_002890214.1 triose-phosphate isomerase -
  V6U66_RS08060 (V6U66_08050) tuf 1743338..1744534 (-) 1197 WP_002890213.1 elongation factor Tu -
  V6U66_RS08065 (V6U66_08055) ftsW 1744771..1746051 (-) 1281 WP_410534449.1 cell division peptidoglycan polymerase FtsW -
  V6U66_RS08070 (V6U66_08060) - 1746311..1746727 (-) 417 WP_410534451.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 70819.53 Da        Isoelectric Point: 4.8083

>NTDB_id=853636 V6U66_RS08050 WP_049553888.1 1740080..1742065(-) (recP/tkt) [Streptococcus salivarius strain KSS7]
MTFDAIDQMAVSTIRSLSIEAIQAANSGHPGLPMGAAPMAYVLWNHVMNVNPKTSRNWTNRDRFVLSAGHGSALLYSLLH
LSGYDVTMDDLKNFRQWGSKTPGHPEVNHTDGIEATSGPLGQGIANAVGMAMAEAHLAAKFNKPGFDIVDHYTYALHGDG
CLMEGVSQEAASLAGHLKLGKLVLLYDSNDISLDGPTSMAFTEDVKAKFEAYGWQHILVKDGNDLEAIAKAIEEAKAETD
KPSIIEVKTIIGYGAEGQGTSAVHGAPIGQDGIDHAKGVYGYDAPAFTVPDEVARRFEVGIKFRGEAAENAWQTKFAEYE
AAYPELAAEYKAAFANEPAHVDLKAHELGSAVASRVSSQQAIQQISEQVPSFWGGSADLSASNNTMVKAESDFQADNYAG
RNIWFGVREFAMAAAMNGIALHGGTRVYGGTFFVFSNYLLPAVRMAALQNLPVTYVMTHDSVAVGEDGPTHEPIEQLASV
RSMPNLNVIRPADGNETNAAWKRALAETERPTMLVLTRQNLPVLDGTAENAEAGVNKGAYIISEAKGDLDGIIIATGSEV
KLALDTQAALEAEGVHVRVVSMPSQNLFDEQDAAYKEEVLPAAVTKRLAIEAGTSFGWGKYVGLAGKTLTIDTWGASAPG
DRIFKEYGFTVENASQLYKSL

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=853636 V6U66_RS08050 WP_049553888.1 1740080..1742065(-) (recP/tkt) [Streptococcus salivarius strain KSS7]
ATGACTTTTGATGCAATTGACCAAATGGCGGTCAGCACTATTCGTTCGCTTTCGATCGAGGCAATTCAAGCCGCGAATTC
TGGGCACCCAGGTCTTCCTATGGGTGCAGCGCCAATGGCTTATGTGCTTTGGAACCATGTGATGAATGTTAATCCAAAGA
CAAGCCGTAACTGGACAAACCGAGACCGTTTTGTTCTTTCTGCAGGTCATGGTTCTGCCTTGCTTTATAGTCTCTTGCAC
CTTTCTGGCTACGACGTGACAATGGACGACTTGAAGAACTTCCGTCAATGGGGATCTAAGACTCCAGGTCACCCTGAAGT
TAACCATACAGATGGTATTGAAGCAACATCAGGTCCTCTTGGTCAAGGGATTGCTAATGCTGTAGGTATGGCAATGGCTG
AAGCACACTTGGCAGCTAAATTTAACAAACCTGGTTTTGATATTGTTGACCATTATACTTATGCCCTCCATGGCGATGGT
TGTTTGATGGAAGGTGTTTCTCAAGAAGCTGCTAGTCTTGCTGGTCACCTTAAACTTGGTAAGTTGGTACTTCTTTACGA
TTCAAATGATATCTCACTTGATGGACCAACTTCAATGGCTTTCACAGAAGATGTTAAGGCTAAGTTTGAAGCTTATGGTT
GGCAACACATTCTTGTTAAGGATGGTAATGATTTGGAAGCTATTGCTAAAGCTATCGAAGAAGCTAAAGCTGAGACAGAT
AAACCATCTATTATCGAAGTTAAGACAATCATTGGTTACGGAGCTGAAGGCCAAGGAACATCAGCTGTCCACGGTGCTCC
AATTGGTCAAGACGGCATTGATCACGCAAAAGGTGTTTACGGTTACGATGCACCGGCATTTACAGTTCCAGATGAAGTAG
CTCGTCGTTTTGAAGTTGGTATTAAATTCCGTGGTGAAGCTGCTGAAAATGCTTGGCAAACTAAATTTGCAGAATATGAA
GCTGCTTACCCAGAATTGGCTGCGGAATACAAGGCTGCCTTTGCGAATGAACCTGCACACGTTGACTTGAAGGCTCATGA
ATTGGGTTCAGCAGTAGCTAGCCGTGTGTCAAGCCAACAAGCTATCCAACAGATTTCTGAACAAGTTCCTTCATTCTGGG
GAGGTTCAGCAGACCTTTCAGCTTCTAACAATACTATGGTTAAGGCTGAGTCTGATTTCCAAGCAGACAACTATGCTGGA
CGTAATATTTGGTTTGGTGTGCGTGAGTTTGCTATGGCTGCAGCGATGAATGGTATTGCTCTTCATGGTGGTACTCGTGT
TTATGGTGGTACTTTCTTCGTCTTCTCAAACTACTTGCTTCCAGCAGTACGTATGGCAGCACTTCAAAACTTGCCAGTGA
CTTATGTTATGACACACGATTCAGTAGCAGTTGGTGAAGATGGACCTACTCACGAACCAATCGAACAATTGGCAAGTGTG
CGTTCAATGCCTAACCTTAACGTTATCCGTCCTGCAGATGGTAATGAAACTAATGCTGCATGGAAACGTGCTTTGGCTGA
GACTGAACGTCCAACAATGCTAGTCTTGACACGTCAAAACTTGCCAGTCCTTGATGGTACAGCTGAAAATGCTGAAGCTG
GTGTCAATAAAGGGGCTTACATTATCTCAGAAGCTAAAGGTGATCTTGATGGTATCATCATTGCGACTGGTTCTGAAGTG
AAATTGGCTCTTGATACTCAAGCGGCTCTTGAAGCTGAAGGCGTGCATGTCCGTGTTGTTTCAATGCCATCACAAAATCT
CTTTGATGAACAAGATGCTGCATATAAAGAAGAAGTTCTTCCAGCAGCTGTGACAAAACGTTTGGCTATTGAAGCTGGAA
CTAGCTTTGGTTGGGGCAAATACGTTGGTCTTGCAGGTAAAACACTTACTATTGATACTTGGGGTGCCTCAGCACCTGGT
GACCGTATCTTTAAAGAATATGGTTTCACTGTTGAAAATGCAAGTCAACTTTACAAATCATTGTAA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-522)

Transketolase, C-terminal domain (Transketolase_C)

(552-652)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(6-334)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

56.535

99.546

0.563