Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   V6U66_RS06340 Genome accession   NZ_CP145864
Coordinates   1379488..1381689 (-) Length   733 a.a.
NCBI ID   WP_118171966.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1374488..1386689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U66_RS06315 (V6U66_06305) - 1375430..1376191 (-) 762 WP_004182656.1 hypothetical protein -
  V6U66_RS06320 (V6U66_06310) nth 1376319..1376963 (-) 645 WP_004182657.1 endonuclease III -
  V6U66_RS06325 (V6U66_06315) - 1376963..1377661 (-) 699 WP_004182658.1 DnaD domain-containing protein -
  V6U66_RS06330 (V6U66_06320) metA 1377734..1378678 (-) 945 WP_004182659.1 homoserine O-succinyltransferase -
  V6U66_RS06335 (V6U66_06325) - 1378851..1379369 (-) 519 WP_045772089.1 adenine phosphoribosyltransferase -
  V6U66_RS06340 (V6U66_06330) recJ 1379488..1381689 (-) 2202 WP_118171966.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  V6U66_RS06345 (V6U66_06335) - 1381995..1382399 (-) 405 WP_045001800.1 GNAT family N-acetyltransferase -
  V6U66_RS06350 (V6U66_06340) - 1382401..1382538 (-) 138 Protein_1199 class I SAM-dependent methyltransferase -
  V6U66_RS06355 (V6U66_06345) - 1382610..1383377 (-) 768 WP_049528836.1 SDR family NAD(P)-dependent oxidoreductase -
  V6U66_RS06360 (V6U66_06350) rnz 1383377..1384306 (-) 930 WP_045001803.1 ribonuclease Z -
  V6U66_RS06365 (V6U66_06355) - 1384338..1384979 (-) 642 WP_045001806.1 cystathionine beta-lyase -
  V6U66_RS06370 (V6U66_06360) hflX 1384972..1386210 (-) 1239 WP_049528888.1 GTPase HflX -

Sequence

Protein


Download         Length: 733 a.a.        Molecular weight: 82388.57 Da        Isoelectric Point: 4.2862

>NTDB_id=853622 V6U66_RS06340 WP_118171966.1 1379488..1381689(-) (recJ) [Streptococcus salivarius strain KSS7]
MITSTYDWKINTKEPDAGFFKLAKEHGLAETAAKIAYERGVTTEEALEDFLKADLSYLHDPYLLHDMDKAVERIRRAIED
YEQILIYGDYDADGMTSASIMKETLEQMGAEVQVYLPNRFTDGYGPNESVYKYFIEQQGISLIVTVDNGVAGNEAIAYAQ
EQGVDVIVTDHHSMPAQLPDAYAIVHPEHPDADYPFKYLAGCGVAFKLATALLETIPTEMLDLVAIGTIADMVSLTDENR
IMVKVGLEILKTTERIGLQELLRISDVDPTTISEETVGFKLAPQLNALGRLDDPNPAIELLTGFDDEEAQAIALEINAKN
EERKEVVQKIFDEAMTMVDLDKPVQVLAKEGWHPGVLGIVAGRIMEQISQTVVVLNIEDGLAKGSARSLESINIFHALDD
HRDIFTAFGGHAGAAGMTLPEENLGQLSDILCHYVYDNDIDTSAKNTLNLDEELQLSELSLDTIKSLEKLAPFGMDNKKP
VFWLHDITVTQARTMGQNGAHLKFKVKQGKDSFDVVAFNKGNLLQEFQQAQGLELAVTLSVNVWNGQTMLQLMLEDARVD
GVQLFDFRSKNMALPEGVPTVEEAADTEPAVVLNTLPESATELKEWFEGKDFQAIYFKNSIKEAYYLTGYGTREQFARLY
KTIYQFPEFDVRYKLDELSHYLKIDKILLIKMIQIFDELDFVTIDNGVMTVNKEAEKREIEDSQIFQDLKRLVKFQELMA
LGTPQEIYDWLYK

Nucleotide


Download         Length: 2202 bp        

>NTDB_id=853622 V6U66_RS06340 WP_118171966.1 1379488..1381689(-) (recJ) [Streptococcus salivarius strain KSS7]
ATGATTACATCAACGTATGATTGGAAAATAAACACAAAAGAGCCAGATGCTGGCTTTTTTAAACTTGCCAAAGAACATGG
GCTGGCAGAAACAGCAGCCAAGATTGCTTATGAACGTGGCGTGACGACAGAAGAGGCCCTTGAAGACTTTCTAAAGGCTG
ATCTATCATACCTTCATGACCCTTATCTTCTTCATGATATGGACAAGGCAGTGGAGCGCATCCGACGGGCCATCGAAGAT
TATGAGCAGATCCTGATCTACGGAGACTATGACGCGGACGGGATGACCTCGGCCTCCATTATGAAGGAAACCTTGGAGCA
GATGGGGGCAGAGGTGCAAGTCTACCTACCCAACCGCTTTACAGACGGCTATGGTCCCAATGAGAGTGTCTATAAATACT
TTATCGAGCAGCAAGGCATTTCCCTGATTGTCACGGTGGACAATGGGGTTGCGGGAAATGAAGCTATTGCTTATGCGCAA
GAGCAAGGTGTGGACGTTATCGTTACAGACCACCATAGTATGCCGGCACAGCTTCCAGATGCCTATGCCATTGTCCATCC
AGAGCATCCAGATGCCGATTATCCTTTTAAGTATTTGGCAGGATGTGGTGTAGCTTTCAAATTGGCAACTGCCCTTCTTG
AAACTATTCCTACAGAGATGTTGGACTTGGTAGCCATTGGTACCATTGCTGATATGGTTAGCCTAACGGATGAAAATCGT
ATTATGGTAAAGGTCGGCCTGGAAATTCTCAAGACTACTGAGCGTATTGGACTTCAAGAATTGCTACGCATCTCAGATGT
GGATCCAACAACGATTTCCGAAGAAACGGTAGGTTTTAAACTGGCTCCTCAACTCAATGCCTTGGGACGCTTAGATGATC
CAAATCCAGCCATTGAACTGTTGACCGGATTTGACGATGAGGAAGCACAAGCCATTGCTCTGGAAATCAATGCTAAAAAT
GAAGAACGTAAGGAAGTTGTTCAAAAAATCTTTGATGAAGCTATGACCATGGTAGACTTGGACAAACCAGTTCAGGTTTT
GGCCAAGGAAGGTTGGCATCCTGGTGTCCTCGGTATTGTGGCTGGGCGCATCATGGAGCAAATCAGCCAGACAGTAGTGG
TTTTGAATATTGAAGATGGCTTGGCAAAGGGTTCAGCCCGTAGTTTGGAATCTATCAATATCTTCCATGCCCTTGATGAC
CACCGAGACATCTTTACTGCTTTTGGAGGACATGCTGGAGCGGCTGGGATGACCCTTCCGGAGGAAAATCTTGGTCAACT
CTCAGATATTTTGTGTCATTATGTCTACGATAATGACATTGATACAAGTGCCAAAAATACGCTTAATTTAGACGAGGAGC
TCCAACTCAGTGAGCTTAGCTTGGATACCATTAAGAGCCTTGAAAAACTAGCACCTTTTGGTATGGATAATAAAAAGCCA
GTCTTTTGGCTACATGATATTACCGTTACTCAAGCTAGGACAATGGGACAAAATGGAGCCCATCTTAAGTTTAAGGTGAA
GCAAGGCAAGGATAGCTTTGACGTTGTCGCTTTTAATAAAGGTAATCTGCTTCAAGAATTTCAACAAGCTCAAGGTTTGG
AATTGGCAGTGACCTTGTCTGTTAATGTTTGGAATGGGCAGACAATGCTACAGCTCATGCTAGAAGATGCGCGTGTAGAT
GGTGTTCAATTATTTGATTTTCGCTCAAAAAATATGGCACTGCCTGAAGGCGTACCAACGGTAGAAGAAGCAGCAGACAC
AGAGCCTGCGGTTGTCCTCAACACCCTACCTGAATCAGCGACAGAATTAAAAGAGTGGTTTGAAGGTAAAGATTTCCAGG
CTATCTATTTTAAAAATAGCATTAAGGAAGCCTATTATCTGACAGGTTATGGAACAAGAGAGCAATTTGCAAGGCTCTAT
AAAACCATTTATCAATTCCCAGAATTCGATGTCCGCTATAAACTGGATGAACTCAGTCATTACCTTAAAATCGACAAGAT
TCTCCTGATTAAGATGATTCAAATCTTTGATGAATTGGATTTTGTGACTATTGATAATGGTGTTATGACAGTCAATAAAG
AAGCTGAAAAACGTGAGATTGAGGACAGTCAGATTTTCCAAGATCTGAAACGACTAGTTAAGTTCCAAGAACTCATGGCT
TTAGGAACACCACAGGAAATTTATGATTGGCTGTATAAGTAG

Domains

Predicted by InterProScan.

RecJ OB domain (RecJ_OB)

(451-556)

DHHA1 domain (DHHA1)

(317-431)

DHH family (DHH)

(83-228)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(585-731)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

67.799

100

0.681
  recJ Bacillus subtilis subsp. subtilis str. 168

38.442

100

0.411