Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   J3989_RS08645 Genome accession   NZ_AP024489
Coordinates   1764330..1765709 (-) Length   459 a.a.
NCBI ID   WP_002224596.1    Uniprot ID   -
Organism   Neisseria meningitidis strain NIID777     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1759330..1770709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3989_RS08630 (NMNIID777_16120) recB 1759442..1763056 (+) 3615 WP_207176956.1 exodeoxyribonuclease V subunit beta Machinery gene
  J3989_RS08635 (NMNIID777_16130) - 1763095..1763454 (+) 360 WP_061702836.1 rhodanese-like domain-containing protein -
  J3989_RS08640 (NMNIID777_16140) - 1763579..1764058 (+) 480 WP_002242481.1 DUF302 domain-containing protein -
  J3989_RS08645 (NMNIID777_16150) radA 1764330..1765709 (-) 1380 WP_002224596.1 DNA repair protein RadA Machinery gene
  J3989_RS08650 (NMNIID777_16160) hemE 1765895..1766959 (-) 1065 WP_002224597.1 uroporphyrinogen decarboxylase -
  J3989_RS08655 (NMNIID777_16170) - 1767034..1768251 (-) 1218 WP_207176957.1 heme biosynthesis protein HemY -
  J3989_RS08660 (NMNIID777_16180) - 1768248..1769522 (-) 1275 WP_002219527.1 uroporphyrinogen-III C-methyltransferase -
  J3989_RS08665 (NMNIID777_16190) - 1769597..1770358 (-) 762 WP_002223909.1 uroporphyrinogen-III synthase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49605.10 Da        Isoelectric Point: 7.0604

>NTDB_id=85362 J3989_RS08645 WP_002224596.1 1764330..1765709(-) (radA) [Neisseria meningitidis strain NIID777]
MAKTLKTLYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQSWAADTSTVQSLSAVTATEVPRNPTGMGELD
RVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQTA
LKQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGAIAGPRVLEHMVDTVLYFEG
DQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAIFLASYRDDTPGSCVLVTQEGSRPLLVEIQALVDDAHGFT
PKRLTVGLEQNRLAMLLAVLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPMPEKTVVFGEIGLSGE
VRPVARGQERLKEAEKLGFKRAIVPKANMPRNAKEFPNLKIYGVSSLQEAIDICREDRD

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=85362 J3989_RS08645 WP_002224596.1 1764330..1765709(-) (radA) [Neisseria meningitidis strain NIID777]
ATGGCAAAAACGCTTAAAACCCTTTACCAATGCACCGAATGCGGCGGCACTTCCCCGAAATGGCAGGGCAAATGCCCGCA
TTGCGGCGAGTGGAACACACTTCAGGAAAGCTTAGCCGCGCCCGAGCCGAAAAACGCCCGTTTCCAATCTTGGGCGGCGG
ATACCTCGACCGTCCAGTCCCTCTCCGCCGTGACCGCCACCGAAGTGCCGCGCAATCCGACCGGTATGGGCGAACTCGAC
CGCGTATTGGGTGGCGGTTTGGTCGATGGCGCGGTCATCCTGCTCGGCGGCGATCCCGGCATCGGCAAATCCACGCTGCT
GTTGCAAACCATCGCCAAAATGGCGCAAAGCCGCAAAGTGCTGTACGTTTCCGGCGAGGAATCCGCCCAACAGGTCGCCT
TGCGCGCGCAACGTTTGGAACTGCCCACCGAAGGCGTGAACCTGCTTGCCGAAATCCGCATGGAAGCCATTCAGACGGCC
TTGAAACAGCATCAGCCCGAAGTCGTGGTTATCGATTCCATCCAAACCATGTATTCCGACCAAATCACTTCCGCCCCCGG
CTCCGTGTCGCAGGTGCGCGAGTGTGCAGCCCAACTGACGCGCATGGCGAAACAGATGGGCATCGCCATGATACTGGTCG
GACACGTGACCAAAGACGGCGCGATTGCCGGCCCGCGCGTGCTGGAACACATGGTTGATACCGTGCTGTATTTCGAGGGC
GACCAACATTCCAACTACCGCATGATACGCGCCATCAAAAACCGCTTCGGCGCGGCAAACGAACTGGGCGTGTTCGCGAT
GACGGAAAACGGTTTGAAAGGTGTGTCCAACCCGTCCGCCATCTTCCTTGCCAGCTACCGCGACGACACGCCCGGTTCGT
GCGTTTTGGTTACGCAGGAAGGCAGCCGCCCGCTTTTGGTTGAAATTCAGGCATTGGTCGATGACGCGCACGGCTTCACG
CCCAAACGCCTTACCGTCGGACTGGAACAAAACCGCCTTGCGATGCTGCTCGCCGTCCTCAACCGCCACGGCGGCATTGC
CTGTTTCGACCAAGACGTGTTTCTCAATGCCGTCGGCGGCGTCAAAATTGGCGAACCCGCCGCCGACCTTGCCGTCATCC
TTGCCATGCTCTCCAGCTTCCGCAACCGCCCCATGCCCGAAAAAACCGTGGTTTTCGGCGAAATCGGCTTAAGCGGCGAA
GTCCGCCCCGTCGCACGCGGACAAGAGCGGCTCAAAGAGGCGGAAAAGCTCGGCTTTAAACGCGCCATCGTCCCAAAAGC
CAATATGCCGCGCAACGCCAAAGAGTTTCCGAACCTGAAAATCTACGGCGTTTCGAGTTTGCAGGAAGCCATCGATATTT
GTCGGGAAGATAGGGATTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(366-428)

AAA domain (AAA_25)

(80-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.33

99.129

0.499
  radA Streptococcus mitis NCTC 12261

47.672

98.257

0.468
  radA Streptococcus pneumoniae Rx1

47.345

98.475

0.466
  radA Streptococcus pneumoniae D39

47.345

98.475

0.466
  radA Streptococcus pneumoniae R6

47.345

98.475

0.466
  radA Streptococcus pneumoniae TIGR4

47.345

98.475

0.466
  radA Streptococcus mitis SK321

47.228

98.257

0.464

Multiple sequence alignment