Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   QY486_RS23400 Genome accession   NZ_CP129496
Coordinates   5029062..5029586 (+) Length   174 a.a.
NCBI ID   WP_301423834.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain CW41     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5024062..5034586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY486_RS23380 (QY486_23380) pilR 5025324..5026661 (+) 1338 WP_003110427.1 two-component system response regulator PilR Regulator
  QY486_RS23385 (QY486_23385) thiO 5026707..5027801 (-) 1095 WP_023103512.1 glycine oxidase ThiO -
  QY486_RS23390 (QY486_23390) - 5027941..5028441 (+) 501 WP_003116259.1 GspH/FimT family pseudopilin -
  QY486_RS23395 (QY486_23395) - 5028564..5029052 (+) 489 WP_003141552.1 GspH/FimT family pseudopilin -
  QY486_RS23400 (QY486_23400) pilV 5029062..5029586 (+) 525 WP_301423834.1 type IV pilus modification protein PilV Machinery gene
  QY486_RS23405 (QY486_23405) - 5029595..5030410 (+) 816 WP_003116262.1 PilW family protein -
  QY486_RS23410 (QY486_23410) - 5030407..5031012 (+) 606 WP_003116263.1 PilX N-terminal domain-containing pilus assembly protein -
  QY486_RS23415 (QY486_23415) - 5031026..5034502 (+) 3477 WP_003116264.1 pilus assembly protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18791.56 Da        Isoelectric Point: 4.9113

>NTDB_id=853618 QY486_RS23400 WP_301423834.1 5029062..5029586(+) (pilV) [Pseudomonas aeruginosa strain CW41]
MSRETGFSMIEVLVALVLISIGVLGMVAMQGRTIQYTQESVQRNAAAMLASDLMEIMRADPDAVLNLRAQLREDSVYYKV
KGSDFPAAPARCAPLPADAKERLGCWAQQASKDLPGASALLNSQFYICRSPTPGTCDNTKGSAIEIQVAWRAMDGACFNA
SDSTLCTYSVRSEL

Nucleotide


Download         Length: 525 bp        

>NTDB_id=853618 QY486_RS23400 WP_301423834.1 5029062..5029586(+) (pilV) [Pseudomonas aeruginosa strain CW41]
ATGTCTCGAGAAACGGGTTTCAGCATGATCGAAGTACTGGTTGCTCTGGTACTGATCAGCATTGGCGTACTGGGCATGGT
TGCCATGCAAGGGCGCACGATCCAGTACACGCAGGAGTCGGTACAACGCAATGCCGCAGCAATGCTTGCTAGCGACCTGA
TGGAAATAATGCGTGCGGACCCAGATGCCGTACTCAATCTACGCGCCCAACTACGCGAAGACTCGGTCTACTACAAGGTC
AAGGGCAGCGACTTTCCCGCAGCCCCAGCGCGCTGCGCGCCATTGCCAGCAGATGCTAAGGAACGTCTCGGCTGCTGGGC
CCAACAGGCCTCGAAAGACTTGCCGGGAGCCTCCGCACTCTTGAATAGCCAATTCTACATTTGTCGCAGCCCAACCCCGG
GTACCTGCGACAACACCAAAGGCTCGGCCATCGAAATCCAGGTTGCCTGGCGAGCCATGGATGGAGCGTGTTTCAACGCC
TCTGACTCCACCTTGTGCACCTACAGCGTCCGCTCCGAATTGTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

58.857

100

0.592