Detailed information NTG0853614

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QY486_RS23265
• Genome accession: NZ_CP129496
• Coordinates: 5003215..5004087 (+)
• Length: 290 a.a.
• NCBI ID: WP_034028547.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain CW41
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4998215..5009087

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QY486_RS23245 (QY486_23245)	-	4998758..4999456 (-)	699	WP_023121720.1	hypothetical protein	-
QY486_RS23250 (QY486_23250)	-	4999520..5000059 (-)	540	WP_003116248.1	pilin	-
QY486_RS23255 (QY486_23255)	pilB	5000288..5001991 (+)	1704	Protein_4598	type IV-A pilus assembly ATPase PilB	-
QY486_RS23260 (QY486_23260)	pilC	5001995..5003212 (+)	1218	WP_003116250.1	type II secretion system F family protein	Machinery gene
QY486_RS23265 (QY486_23265)	pilD	5003215..5004087 (+)	873	WP_034028547.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
QY486_RS23270 (QY486_23270)	coaE	5004084..5004695 (+)	612	WP_003094654.1	dephospho-CoA kinase	-
QY486_RS23275 (QY486_23275)	yacG	5004692..5004892 (+)	201	WP_017148551.1	DNA gyrase inhibitor YacG	-
QY486_RS23280 (QY486_23280)	-	5004929..5005138 (-)	210	WP_003094660.1	hypothetical protein	-
QY486_RS23285 (QY486_23285)	-	5005244..5005933 (-)	690	WP_003094662.1	energy-coupling factor ABC transporter permease	-
QY486_RS23290 (QY486_23290)	-	5005930..5006400 (-)	471	WP_023084851.1	hypothetical protein	-
QY486_RS23295 (QY486_23295)	-	5006397..5006822 (-)	426	WP_023084850.1	GNAT family N-acetyltransferase	-
QY486_RS23300 (QY486_23300)	-	5006955..5007584 (+)	630	WP_074203098.1	DUF1780 domain-containing protein	-
QY486_RS23305 (QY486_23305)	-	5007581..5008030 (+)	450	WP_003161439.1	MOSC domain-containing protein	-
QY486_RS23310 (QY486_23310)	-	5008056..5008226 (+)	171	WP_003094672.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31905.91 Da
• Isoelectric Point: 7.3454

>NTDB_id=853614 QY486_RS23265 WP_034028547.1 5003215..5004087(+) (pilD) [Pseudomonas aeruginosa strain CW41]
MELLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMFLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=853614 QY486_RS23265 WP_034028547.1 5003215..5004087(+) (pilD) [Pseudomonas aeruginosa strain CW41]
ATGGAACTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGTTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGTCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.671	99.655	0.545
pilD	Vibrio campbellii strain DS40M4	53.497	98.621	0.528
pilD	Acinetobacter nosocomialis M2	50	97.931	0.49
pilD	Acinetobacter baumannii D1279779	50	97.931	0.49
pilD	Neisseria gonorrhoeae MS11	48.921	95.862	0.469