Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   V6U66_RS05385 Genome accession   NZ_CP145864
Coordinates   1183891..1184961 (-) Length   356 a.a.
NCBI ID   WP_155213113.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1178891..1189961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U66_RS05370 (V6U66_05355) pstB 1179614..1180372 (+) 759 WP_002890956.1 phosphate ABC transporter ATP-binding protein PstB -
  V6U66_RS05375 (V6U66_05360) phoU 1180401..1181054 (+) 654 WP_004182526.1 phosphate signaling complex protein PhoU -
  V6U66_RS05380 (V6U66_05365) - 1181188..1183728 (+) 2541 WP_410534393.1 M1 family metallopeptidase -
  V6U66_RS05385 (V6U66_05370) xerS 1183891..1184961 (-) 1071 WP_155213113.1 tyrosine recombinase XerS Machinery gene
  V6U66_RS05390 (V6U66_05375) - 1185283..1187559 (-) 2277 WP_410534394.1 zinc-ribbon domain-containing protein -
  V6U66_RS05395 (V6U66_05380) - 1187569..1188294 (-) 726 WP_410534395.1 hypothetical protein -
  V6U66_RS05400 (V6U66_05385) - 1188272..1189273 (-) 1002 WP_410534396.1 hypothetical protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41430.55 Da        Isoelectric Point: 9.4805

>NTDB_id=853614 V6U66_RS05385 WP_155213113.1 1183891..1184961(-) (xerS) [Streptococcus salivarius strain KSS7]
MKRELLLEKIEEYKSLMPWFVLEYYQSKLSVPYSFTTLYEYLKEYKRFFDWLIDSGISDAHDIASIDIKTLENLTKKDME
SFVLFLRERPSLNTYSKKQGVSQTTINRTLSALSSLYKYLTEEVEGPDGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETMEFLDYVENEYEVKLSNRAKSSFYKNKERDLAIIALLLASGVRLSEAVNLDLKDINLKMMVIDVTRKGGKRDS
VNVASFAKPYLENYLSIRDKRYKAEKQDLALFLTEYRGVPNRIDASSIEKMVAKYSQDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=853614 V6U66_RS05385 WP_155213113.1 1183891..1184961(-) (xerS) [Streptococcus salivarius strain KSS7]
ATGAAACGTGAACTCTTACTCGAAAAAATTGAAGAATACAAATCTCTTATGCCTTGGTTTGTCTTGGAGTATTATCAGTC
TAAACTATCGGTTCCATATTCTTTTACGACCTTATACGAATACCTAAAGGAATATAAACGCTTTTTTGACTGGTTGATTG
ACTCAGGTATTTCAGATGCTCATGATATTGCCTCAATTGACATCAAAACCCTGGAAAATCTAACTAAAAAAGACATGGAG
TCATTTGTGCTCTTTCTACGTGAACGTCCGTCCTTAAATACCTATTCCAAGAAACAGGGAGTTTCTCAAACAACCATTAA
CCGTACGCTTTCAGCTCTATCTAGTCTCTATAAGTATTTAACTGAGGAGGTCGAGGGTCCTGACGGTGAGCCATATTTCT
ATCGTAACGTCATGAAAAAAGTTTCTACTAAGAAAAAGAAAGAAACTCTAGCTGCACGTGCTGAGAATATCAAGCAGAAA
CTCTTTCTAGGCGATGAAACCATGGAATTTCTTGATTATGTCGAAAATGAATACGAAGTTAAGCTCTCAAATCGCGCAAA
ATCTTCGTTTTACAAGAATAAAGAACGTGATTTAGCGATAATAGCCTTGCTACTGGCTTCAGGGGTTCGACTTTCTGAGG
CTGTTAACCTGGACCTTAAAGATATCAATCTGAAAATGATGGTCATTGATGTTACTCGAAAAGGTGGCAAACGAGACTCA
GTTAATGTAGCAAGTTTTGCAAAACCTTATCTTGAAAATTATCTTAGTATCCGTGATAAACGCTATAAGGCTGAAAAGCA
AGACCTTGCCCTATTTTTAACGGAATATCGAGGGGTTCCAAACCGTATTGATGCTTCAAGTATCGAAAAAATGGTTGCCA
AATATTCTCAGGATTTCAAGATACGTGTGACTCCCCATAAACTACGACACACTCTGGCAACACGTCTTTATGATGCTACC
AAGTCTCAAGTTTTAGTTAGCCACCAACTTGGCCATGCTTCCACTCAGGTCACTGATCTTTATACTCATATCGTCAATGA
TGAGCAAAAAAACGCTCTAGATAATTTATAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(183-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

83.146

100

0.831