Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   QY486_RS09995 Genome accession   NZ_CP129496
Coordinates   2146830..2147465 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain CW41     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2141830..2152465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY486_RS09980 (QY486_09980) - 2142536..2143780 (+) 1245 WP_003118085.1 lipoprotein-releasing ABC transporter permease subunit -
  QY486_RS09985 (QY486_09985) - 2143868..2144401 (-) 534 WP_301424289.1 DUF2062 domain-containing protein -
  QY486_RS09990 (QY486_09990) comA 2144532..2146757 (+) 2226 WP_301424290.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QY486_RS09995 (QY486_09995) exbB 2146830..2147465 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  QY486_RS10000 (QY486_10000) - 2147462..2147902 (+) 441 WP_003091161.1 biopolymer transporter ExbD -
  QY486_RS10005 (QY486_10005) lpxK 2147902..2148900 (+) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  QY486_RS10010 (QY486_10010) - 2148938..2149123 (+) 186 WP_003091157.1 Trm112 family protein -
  QY486_RS10015 (QY486_10015) kdsB 2149123..2149887 (+) 765 WP_003091155.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QY486_RS10020 (QY486_10020) - 2149887..2150351 (+) 465 WP_003091154.1 low molecular weight protein-tyrosine-phosphatase -
  QY486_RS10025 (QY486_10025) murB 2150348..2151367 (+) 1020 WP_003118084.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=853605 QY486_RS09995 WP_003091163.1 2146830..2147465(+) (exbB) [Pseudomonas aeruginosa strain CW41]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=853605 QY486_RS09995 WP_003091163.1 2146830..2147465(+) (exbB) [Pseudomonas aeruginosa strain CW41]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGTA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81