Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   V6U66_RS00195 Genome accession   NZ_CP145864
Coordinates   24414..25187 (+) Length   257 a.a.
NCBI ID   WP_049553552.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 19414..30187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U66_RS00175 (V6U66_00175) mreD 19937..20461 (+) 525 WP_049527614.1 rod shape-determining protein MreD -
  V6U66_RS00180 (V6U66_00180) - 20546..21982 (+) 1437 WP_061652478.1 CHAP domain-containing protein -
  V6U66_RS00185 (V6U66_00185) - 22194..23159 (+) 966 WP_002886286.1 ribose-phosphate diphosphokinase -
  V6U66_RS00190 (V6U66_00190) - 23252..24427 (+) 1176 WP_014633755.1 pyridoxal phosphate-dependent aminotransferase -
  V6U66_RS00195 (V6U66_00195) recO 24414..25187 (+) 774 WP_049553552.1 DNA repair protein RecO Machinery gene
  V6U66_RS00200 (V6U66_00200) plsX 25399..26403 (+) 1005 WP_045772351.1 phosphate acyltransferase PlsX -
  V6U66_RS00205 (V6U66_00205) - 26403..26648 (+) 246 WP_004181960.1 phosphopantetheine-binding protein -
  V6U66_RS00210 (V6U66_00210) purC 26907..27614 (+) 708 WP_002886293.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29734.85 Da        Isoelectric Point: 4.9545

>NTDB_id=853558 V6U66_RS00195 WP_049553552.1 24414..25187(+) (recO) [Streptococcus salivarius strain KSS7]
MQKLESRGLVLFNRNYRENDKLVKIFTEQAGKRMFFVRGGGSGKLSAVIQPLTIAEFIMTVNDEGLSFIEDYSQAESFKE
ITSDIFKLSYATYLAALTDVAIADGVTDAQLFAFLEKTLELMEEGLDYEILTNIFEIQVLDRFGVRLNFHECVFCHRVGL
PFDFSYKFSGLLCPNHYAEDERRSHLDPNVPYLLDRFQGLSFEELRSISVKDDMKRKLRHFIDDLYDNYVGIHLKSKKFI
DNLNSWGHIMNKEDSAD

Nucleotide


Download         Length: 774 bp        

>NTDB_id=853558 V6U66_RS00195 WP_049553552.1 24414..25187(+) (recO) [Streptococcus salivarius strain KSS7]
ATGCAGAAGCTTGAGAGTAGAGGACTTGTCCTATTCAATCGTAATTATCGTGAGAACGATAAGCTAGTTAAGATTTTTAC
CGAGCAAGCTGGTAAACGGATGTTTTTTGTTAGAGGTGGTGGGTCAGGTAAATTAAGTGCTGTGATTCAACCTTTAACCA
TCGCTGAATTCATAATGACTGTAAATGATGAGGGCTTATCTTTCATAGAGGATTATAGCCAGGCAGAGTCCTTCAAGGAA
ATTACAAGCGATATTTTCAAGCTGTCTTATGCGACTTATTTAGCTGCTCTGACGGACGTTGCTATTGCTGACGGTGTGAC
AGATGCGCAATTATTTGCATTCTTGGAGAAGACGCTTGAATTAATGGAAGAAGGCTTGGATTATGAAATCTTGACTAATA
TCTTTGAGATTCAGGTTTTAGACCGTTTCGGTGTACGATTGAATTTTCACGAGTGTGTCTTTTGCCATCGTGTAGGCCTT
CCTTTTGATTTTTCGTATAAGTTCTCGGGGTTACTTTGTCCAAATCACTATGCAGAGGATGAAAGGCGTAGTCACTTAGA
TCCTAATGTACCTTATCTTTTAGATCGTTTTCAGGGGCTTTCTTTTGAGGAATTGAGAAGCATATCTGTTAAGGATGACA
TGAAACGAAAGCTACGACATTTTATTGATGACCTCTATGATAATTATGTTGGAATACATCTTAAAAGTAAGAAGTTTATT
GATAATCTAAATTCTTGGGGCCATATTATGAATAAAGAAGATAGTGCTGACTAG

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

62.451

98.444

0.615