Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   J3989_RS06725 Genome accession   NZ_AP024489
Coordinates   1418458..1420203 (+) Length   581 a.a.
NCBI ID   WP_101126697.1    Uniprot ID   -
Organism   Neisseria meningitidis strain NIID777     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1413458..1425203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3989_RS06700 (NMNIID777_12480) - 1413695..1415233 (+) 1539 WP_101126699.1 SurA N-terminal domain-containing protein -
  J3989_RS06705 (NMNIID777_12490) recR 1415300..1415917 (+) 618 WP_002217147.1 recombination mediator RecR -
  J3989_RS06710 (NMNIID777_12500) - 1415973..1416251 (-) 279 WP_002220967.1 hypothetical protein -
  J3989_RS06715 (NMNIID777_12510) - 1416456..1417703 (+) 1248 WP_207176869.1 lipoprotein-releasing ABC transporter permease subunit -
  J3989_RS06720 (NMNIID777_12520) lolD 1417696..1418391 (+) 696 WP_101126698.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  J3989_RS06725 (NMNIID777_12530) recD 1418458..1420203 (+) 1746 WP_101126697.1 exodeoxyribonuclease V subunit alpha Machinery gene
  J3989_RS06730 (NMNIID777_12540) - 1420275..1421378 (-) 1104 WP_207176871.1 class I SAM-dependent methyltransferase -
  J3989_RS06735 - 1421353..1421529 (-) 177 WP_239994126.1 nitric oxide synthase -
  J3989_RS06740 (NMNIID777_12550) lon 1421629..1424091 (+) 2463 WP_050888397.1 endopeptidase La -
  J3989_RS06745 (NMNIID777_12560) - 1424273..1424542 (+) 270 WP_002213508.1 HU family DNA-binding protein -
  J3989_RS06750 (NMNIID777_12570) - 1424601..1425035 (-) 435 WP_002222429.1 hypothetical protein -

Sequence

Protein


Download         Length: 581 a.a.        Molecular weight: 63287.92 Da        Isoelectric Point: 5.7390

>NTDB_id=85355 J3989_RS06725 WP_101126697.1 1418458..1420203(+) (recD) [Neisseria meningitidis strain NIID777]
MERQTDEFAQAAARAAIRFLEHYAGSGDEVLANCTERLFQALQNGHSFIRLSGGEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAAGTSAPDAAGARQNLAKWFQGTGSEGQRDAAALALLQSFMVITGGPGTGKTTTVAKLLA
LICGEDENLPNIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLLKLRPPKMQAAFDHIRPLPFDVL
IVDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTILDRETYKSLNLYLPEHGFPVHEDAPVLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNAQVERLYRAHKAYWQAVKDGNIEAAYVGI
SDIVVLAAWRQDSEDFNEAYCRHVRRKMNIPEHQAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPEFEPAFAMTVHKSQGSEYREVWLLPPSAAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGEEAFRQAA
ATVKTRQTALGSMLERVFSQE

Nucleotide


Download         Length: 1746 bp        

>NTDB_id=85355 J3989_RS06725 WP_101126697.1 1418458..1420203(+) (recD) [Neisseria meningitidis strain NIID777]
ATGGAACGGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCCGTTTTTTGGAACACTATGCGGGTTCCGG
CGACGAAGTGCTTGCAAACTGCACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGTG
GCGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAGATAAAACGCTTGGCGGCAGCCGGCACGTCCGCCCC
CGACGCGGCAGGCGCGCGGCAAAACCTCGCAAAATGGTTTCAAGGCACGGGCAGCGAAGGGCAGCGCGATGCCGCCGCCT
TGGCACTGTTGCAGTCTTTTATGGTGATTACCGGCGGGCCAGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCG
CTGATTTGCGGTGAAGACGAAAATCTTCCCAACATCGCGCTTGCCGCACCGACAGGCAAAGCGGCGGCACATATGGCGCG
CGCGCTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGATTGCTGAAGCTGCGCCCGCCCAAAATGCAGGCGGCGTTCGACCATATCCGTCCGCTGCCGTTCGATGTGCTG
ATTGTCGATGAAGCCTCCATGTTGGATACCGCATTGATGCTGCAACTTTTGAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGGGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGCGGTGCTGTCCGTTTTGTCGCAAAAAACCATTTTGG
ACAGAGAAACGTATAAAAGTTTGAACCTCTACCTGCCCGAACACGGATTTCCGGTACACGAAGATGCTCCCGTGCTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAGGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAACGCTCAAG
TCGAAAGGTTGTACCGGGCACACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGTGGGCATC
TCGGATATCGTGGTTCTGGCAGCTTGGCGGCAGGATTCGGAAGACTTCAACGAAGCCTATTGCCGCCATGTACGCCGCAA
AATGAACATACCGGAACATCAGGCCTATTTCGCCGGAGAACCGATTATGATCAGACAGAACGACTACGCGCTTGAACTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGAATTTGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGCCGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCGAGGGAGAAGTTCGTATTCTTCGGCGGGGAAGAAGCCTTCCGGCAAGCTGCC
GCCACCGTCAAAACGCGTCAGACGGCATTGGGCAGTATGCTTGAGCGGGTATTTTCACAAGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(125-290)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(494-548)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

93.632

100

0.936

Multiple sequence alignment