Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   QYL87_RS03865 Genome accession   NZ_CP129461
Coordinates   881737..882453 (-) Length   238 a.a.
NCBI ID   WP_014613411.1    Uniprot ID   X2JA42
Organism   Staphylococcus pseudintermedius strain N13-1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 876737..887453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYL87_RS03845 - 877791..877905 (-) 115 Protein_755 ribose transporter RbsU -
  QYL87_RS03850 - 878242..879189 (+) 948 WP_063278589.1 LacI family DNA-binding transcriptional regulator -
  QYL87_RS03855 - 879245..880729 (+) 1485 WP_063278588.1 sucrose-6-phosphate hydrolase -
  QYL87_RS03860 - 880733..881677 (+) 945 WP_096636796.1 carbohydrate kinase -
  QYL87_RS03865 agrA 881737..882453 (-) 717 WP_014613411.1 quorum-sensing response regulator AgrA Regulator
  QYL87_RS03870 agrC 882467..883759 (-) 1293 WP_096636795.1 quorum-sensing sensor histidine kinase AgrC -
  QYL87_RS03875 agrD 883782..883919 (-) 138 WP_019166405.1 cyclic lactone autoinducer peptide AgrD -
  QYL87_RS03880 - 883921..884487 (-) 567 WP_096636794.1 accessory gene regulator AgrB -
  QYL87_RS12315 - 884879..884956 (+) 78 WP_126511050.1 delta-lysin family phenol-soluble modulin -
  QYL87_RS03885 - 885244..886047 (-) 804 WP_301406104.1 carbon-nitrogen family hydrolase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 28002.15 Da        Isoelectric Point: 5.4331

>NTDB_id=853528 QYL87_RS03865 WP_014613411.1 881737..882453(-) (agrA) [Staphylococcus pseudintermedius strain N13-1]
MKILICEDDPKQRERMVSIIENYIMIEEKPMKIELATNDPYAILETSKNMTDIGCYFLDIQLESDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPEELRTRIIDCLETALKRLDLLTKDHTVETLELKRGTSSVYVNYDDVM
FFESSPKSHRLIAHLDNRQIEFYGNLKELAQLDDRFFRCHNSYVLNRRNITSVDTKERIAYFKNEEFCYVSVRNLKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=853528 QYL87_RS03865 WP_014613411.1 881737..882453(-) (agrA) [Staphylococcus pseudintermedius strain N13-1]
ATGAAAATTTTGATTTGTGAGGATGATCCTAAACAACGCGAACGTATGGTATCCATTATTGAAAACTATATTATGATTGA
AGAGAAGCCGATGAAAATTGAGCTTGCTACCAATGACCCTTATGCTATCTTAGAAACTTCTAAAAACATGACTGATATTG
GCTGCTACTTTTTAGATATTCAATTAGAGTCTGATATTAACGGGATTAAATTAGGGAGCGAAATTCGTAAGCACGATCCT
GTTGGGAATATTATTTTTGTGACGAGTCATAGTGAGCTGACGTACTTGACGTTTGTCTATAAAGTGGCTGCCATGGATTT
TATTTTTAAAGATGATCCTGAAGAATTAAGGACACGCATTATCGATTGTTTAGAAACAGCATTAAAACGGCTTGATTTAT
TAACAAAAGATCATACTGTTGAAACTTTGGAACTCAAACGTGGAACAAGCTCGGTTTACGTGAACTATGACGACGTGATG
TTTTTCGAGTCTTCACCGAAGTCACATCGTTTAATCGCGCATTTAGACAATCGTCAAATCGAATTTTACGGCAATTTGAA
AGAGTTAGCTCAACTCGATGATCGATTCTTCAGATGCCACAACAGTTATGTGCTAAACAGAAGAAATATTACAAGTGTCG
ATACGAAAGAACGGATTGCTTATTTCAAAAATGAAGAATTTTGTTACGTGTCGGTGCGTAATTTGAAGAAAATTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(152-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB X2JA42

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

83.193

100

0.832