Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   V6U65_RS04935 Genome accession   NZ_CP145863
Coordinates   1023520..1024590 (+) Length   356 a.a.
NCBI ID   WP_410533028.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1018520..1029590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U65_RS04920 (V6U65_04920) glgP 1018625..1020886 (+) 2262 WP_022496654.1 glycogen/starch/alpha-glucan family phosphorylase -
  V6U65_RS04925 (V6U65_04925) - 1020998..1022137 (-) 1140 WP_229103920.1 hypothetical protein -
  V6U65_RS04930 (V6U65_04930) - 1022246..1023235 (+) 990 WP_048675812.1 lipoate--protein ligase -
  V6U65_RS04935 (V6U65_04935) xerS 1023520..1024590 (+) 1071 WP_410533028.1 tyrosine recombinase XerS Machinery gene
  V6U65_RS04940 (V6U65_04940) - 1024753..1027293 (-) 2541 WP_048675805.1 M1 family metallopeptidase -
  V6U65_RS04945 (V6U65_04945) phoU 1027427..1028080 (-) 654 WP_021146873.1 phosphate signaling complex protein PhoU -
  V6U65_RS04950 (V6U65_04950) pstB 1028109..1028867 (-) 759 WP_002884992.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41312.41 Da        Isoelectric Point: 9.4643

>NTDB_id=853495 V6U65_RS04935 WP_410533028.1 1023520..1024590(+) (xerS) [Streptococcus salivarius strain KSS6]
MKRELLLEKIEEYKSLMPWFVLEYYQSKLSVPYSFTTLYEYLKEYKRFFDWLIDSGISDADGIASIDIKTLENLTKKDME
SFVLYLRERPSLNTYSKKQGVSQTTINRTLSALSSLYKYLTEEVEGPDGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETMEFLDYVENEYEVKLSNRAKSSFYKNKERDLAIIALLLASGVRLSEAVNLDLKDINLKMMVIDVTRKGGKRDS
VNVASFAKPYLETYLSIRDKRYKAEKQDVALFLTEYRGVPNRIDASSIEKMVAKYSQDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDSL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=853495 V6U65_RS04935 WP_410533028.1 1023520..1024590(+) (xerS) [Streptococcus salivarius strain KSS6]
ATGAAACGTGAACTCTTACTCGAAAAAATTGAAGAATACAAATCTCTTATGCCCTGGTTTGTTCTGGAGTATTATCAGTC
TAAACTATCGGTACCGTATTCTTTTACAACCTTATACGAATACCTTAAGGAATATAAACGCTTTTTTGACTGGTTGATTG
ACTCAGGTATTTCAGATGCTGATGGTATTGCCTCAATTGACATCAAAACCTTGGAAAATCTAACTAAAAAAGATATGGAG
TCATTTGTCCTTTATCTACGTGAACGTCCATCTTTGAATACCTATTCCAAGAAACAGGGTGTCTCTCAAACGACTATTAA
TCGTACACTTTCAGCTCTATCTAGTCTCTATAAGTATTTAACCGAGGAGGTCGAGGGTCCTGACGGTGAGCCTTATTTCT
ATCGTAACGTCATGAAAAAAGTTTCTACTAAGAAAAAGAAAGAAACTCTAGCTGCTCGTGCTGAGAATATCAAACAGAAA
CTCTTTCTAGGCGATGAGACCATGGAATTTCTTGATTATGTAGAAAATGAATACGAAGTCAAGCTCTCAAATCGCGCCAA
ATCTTCGTTTTATAAGAATAAAGAACGTGATTTGGCTATCATTGCCTTGCTACTGGCTTCAGGTGTTCGACTTTCTGAGG
CTGTTAATTTGGACCTTAAAGATATCAATCTAAAAATGATGGTCATTGATGTTACTCGAAAAGGCGGCAAACGTGACTCA
GTTAATGTAGCAAGTTTTGCAAAGCCCTATCTTGAAACTTATCTTAGTATACGTGATAAACGCTATAAGGCTGAAAAGCA
AGATGTTGCCCTCTTTTTAACGGAATATCGAGGGGTTCCCAACCGTATTGATGCTTCGAGTATCGAAAAAATGGTTGCCA
AATATTCTCAGGATTTCAAGATACGTGTGACTCCTCATAAACTTCGACATACTCTGGCAACACGTCTTTATGATGCTACC
AAATCTCAAGTTTTAGTTAGTCATCAACTTGGCCATGCTTCCACTCAGGTTACTGATCTATATACGCATATTGTTAATGA
TGAACAAAAAAATGCTCTAGACAGTTTATAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(183-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

83.708

100

0.837