Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QY487_RS08100 Genome accession   NZ_CP129459
Coordinates   1600813..1601712 (+) Length   299 a.a.
NCBI ID   WP_094246940.1    Uniprot ID   -
Organism   Bacillus velezensis strain SSF6     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1595813..1606712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY487_RS08080 (QY487_08080) - 1596503..1598206 (+) 1704 WP_094246941.1 glycosyl transferase -
  QY487_RS08085 (QY487_08085) - 1598203..1598484 (+) 282 WP_007409769.1 FlhB-like flagellar biosynthesis protein -
  QY487_RS08090 (QY487_08090) sucC 1598659..1599816 (+) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  QY487_RS08095 (QY487_08095) sucD 1599845..1600747 (+) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  QY487_RS08100 (QY487_08100) dprA 1600813..1601712 (+) 900 WP_094246940.1 DNA-processing protein DprA Machinery gene
  QY487_RS08105 (QY487_08105) topA 1601894..1603969 (+) 2076 WP_025649465.1 type I DNA topoisomerase -
  QY487_RS08110 (QY487_08110) trmFO 1604034..1605341 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  QY487_RS08115 (QY487_08115) xerC 1605411..1606328 (+) 918 WP_007409774.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32878.95 Da        Isoelectric Point: 7.5073

>NTDB_id=853447 QY487_RS08100 WP_094246940.1 1600813..1601712(+) (dprA) [Bacillus velezensis strain SSF6]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPDPHPLTVLSEGKTAPEEIFREIERKDPELDEVLSDYRREGITVI
PISSSRYPTWLKAIYDPPAVLYAKGNTPLLEKGRKIGIVGTRKPTEDGIKAAGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=853447 QY487_RS08100 WP_094246940.1 1600813..1601712(+) (dprA) [Bacillus velezensis strain SSF6]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCACTCTCTGTCTTTTTTACCGGATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGCCCCGGAAGAAA
TTTTTCGGGAAATAGAGCGCAAGGATCCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGCGAAGGCATTACTGTCATT
CCGATTTCATCAAGCCGCTACCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
GCCGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGCTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCATTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCCCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

70.234

100

0.702
  dprA Lactococcus lactis subsp. cremoris KW2

41.288

88.294

0.365