Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QY487_RS07235 Genome accession   NZ_CP129459
Coordinates   1383094..1383378 (+) Length   94 a.a.
NCBI ID   WP_024085249.1    Uniprot ID   -
Organism   Bacillus velezensis strain SSF6     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1378094..1388378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY487_RS07215 (QY487_07215) - 1379341..1380249 (+) 909 WP_017417693.1 ketopantoate reductase family protein -
  QY487_RS07220 (QY487_07220) - 1380278..1381510 (-) 1233 WP_007409644.1 aminopeptidase -
  QY487_RS07225 (QY487_07225) - 1381611..1381745 (-) 135 WP_003154559.1 protein YkpC -
  QY487_RS07230 (QY487_07230) mreBH 1381817..1382824 (-) 1008 WP_014417632.1 cell shape-determining protein MreBH -
  QY487_RS07235 (QY487_07235) abrB 1383094..1383378 (+) 285 WP_024085249.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  QY487_RS07240 (QY487_07240) - 1383551..1384855 (+) 1305 WP_014304932.1 ATP-binding protein -
  QY487_RS07245 (QY487_07245) - 1384857..1385684 (+) 828 WP_077722153.1 gamma-glutamylcyclotransferase family protein -
  QY487_RS07250 (QY487_07250) ktrC 1385725..1386390 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  QY487_RS07255 (QY487_07255) ade 1386539..1388272 (+) 1734 WP_094246976.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10574.41 Da        Isoelectric Point: 5.2271

>NTDB_id=853446 QY487_RS07235 WP_024085249.1 1383094..1383378(+) (abrB) [Bacillus velezensis strain SSF6]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=853446 QY487_RS07235 WP_024085249.1 1383094..1383378(+) (abrB) [Bacillus velezensis strain SSF6]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACCGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543