Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   QY487_RS07125 Genome accession   NZ_CP129459
Coordinates   1362598..1363194 (+) Length   198 a.a.
NCBI ID   WP_003154591.1    Uniprot ID   -
Organism   Bacillus velezensis strain SSF6     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1357598..1368194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY487_RS07095 (QY487_07095) - 1357814..1358269 (+) 456 WP_094246983.1 flavodoxin -
  QY487_RS07100 (QY487_07100) dapD 1358351..1359061 (+) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  QY487_RS07105 (QY487_07105) - 1359132..1360256 (+) 1125 WP_094246982.1 N-acetyldiaminopimelate deacetylase -
  QY487_RS07110 (QY487_07110) - 1360317..1360562 (+) 246 WP_003154596.1 YkuS family protein -
  QY487_RS07115 (QY487_07115) - 1360596..1361402 (-) 807 WP_060386912.1 mechanosensitive ion channel family protein -
  QY487_RS07120 (QY487_07120) - 1361689..1362147 (+) 459 WP_094246981.1 redoxin domain-containing protein -
  QY487_RS07125 (QY487_07125) rok 1362598..1363194 (+) 597 WP_003154591.1 transcriptional regulator Rok Regulator
  QY487_RS07130 (QY487_07130) - 1363215..1364207 (-) 993 WP_014304925.1 hypothetical protein -
  QY487_RS07135 (QY487_07135) - 1364353..1364955 (+) 603 WP_003154587.1 molybdenum cofactor guanylyltransferase -
  QY487_RS07140 (QY487_07140) - 1365007..1366026 (+) 1020 WP_003154586.1 molybdopterin-synthase adenylyltransferase MoeB -
  QY487_RS07145 (QY487_07145) glp 1366044..1367336 (+) 1293 WP_094246980.1 gephyrin-like molybdotransferase Glp -
  QY487_RS07150 (QY487_07150) mobB 1367297..1367818 (+) 522 WP_063174790.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22525.57 Da        Isoelectric Point: 9.6909

>NTDB_id=853445 QY487_RS07125 WP_003154591.1 1362598..1363194(+) (rok) [Bacillus velezensis strain SSF6]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=853445 QY487_RS07125 WP_003154591.1 1362598..1363194(+) (rok) [Bacillus velezensis strain SSF6]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACGGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCGCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843