Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   V6U64_RS09955 Genome accession   NZ_CP145862
Coordinates   2146707..2147480 (-) Length   257 a.a.
NCBI ID   WP_002889563.1    Uniprot ID   J7SI19
Organism   Streptococcus salivarius strain KSS4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2141707..2152480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U64_RS09940 (V6U64_09945) purC 2144277..2144984 (-) 708 WP_037599463.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  V6U64_RS09945 (V6U64_09950) - 2145246..2145491 (-) 246 WP_002889565.1 phosphopantetheine-binding protein -
  V6U64_RS09950 (V6U64_09955) plsX 2145491..2146495 (-) 1005 WP_410536654.1 phosphate acyltransferase PlsX -
  V6U64_RS09955 (V6U64_09960) recO 2146707..2147480 (-) 774 WP_002889563.1 DNA repair protein RecO Machinery gene
  V6U64_RS09960 (V6U64_09965) - 2147467..2148642 (-) 1176 WP_410536656.1 pyridoxal phosphate-dependent aminotransferase -
  V6U64_RS09965 (V6U64_09970) - 2148734..2149699 (-) 966 WP_014633754.1 ribose-phosphate diphosphokinase -
  V6U64_RS09970 (V6U64_09975) - 2149911..2151422 (-) 1512 WP_070575628.1 CHAP domain-containing protein -
  V6U64_RS09975 (V6U64_09980) mreD 2151507..2152031 (-) 525 WP_070475767.1 rod shape-determining protein MreD -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29775.96 Da        Isoelectric Point: 4.9437

>NTDB_id=853445 V6U64_RS09955 WP_002889563.1 2146707..2147480(-) (recO) [Streptococcus salivarius strain KSS4]
MQKLESRGLVLFNRNYRENDKLVKIFTEQAGKRMFFVRGGGAGKLSAVIQPLTIAEFMMTVNDEGLSFIEDYSQAQSFKE
ITSDIFKLSYATYLAALTDATIADGVTDAQLFVFLEKTLELMEEGLDYEILTNIFEIQVLDRFGVRLNFHECVFCHRVGL
PFDFSFKFSGLLCPNHYAEDERRSHLDPNVPYLLDRFQGLSFEELRSISVKDDMKRKLRYFIDDLYDNYVGIHLKSKKFI
DNLNSWGHIMNKEDSAD

Nucleotide


Download         Length: 774 bp        

>NTDB_id=853445 V6U64_RS09955 WP_002889563.1 2146707..2147480(-) (recO) [Streptococcus salivarius strain KSS4]
ATGCAGAAGCTTGAGAGTAGAGGCCTTGTCCTCTTCAATCGTAATTATCGTGAGAATGATAAACTAGTTAAAATTTTTAC
CGAGCAAGCTGGTAAACGGATGTTTTTTGTTAGAGGTGGTGGGGCAGGTAAATTAAGTGCTGTCATTCAACCCTTGACCA
TCGCTGAATTCATGATGACTGTAAATGATGAAGGTCTATCTTTCATAGAAGATTATAGCCAGGCACAATCCTTCAAGGAA
ATTACAAGCGATATTTTCAAGCTGTCTTATGCGACATATTTGGCTGCATTGACAGATGCTACTATTGCTGATGGTGTGAC
AGATGCGCAATTATTTGTATTCTTGGAGAAGACGCTTGAATTAATGGAAGAAGGCTTGGATTATGAAATCTTGACTAATA
TCTTTGAGATTCAGGTTTTAGACCGTTTCGGCGTACGCTTGAATTTTCACGAGTGTGTCTTTTGTCATCGTGTAGGCCTT
CCTTTTGATTTCTCGTTTAAGTTCTCGGGGCTACTTTGTCCAAATCACTATGCAGAGGATGAAAGGCGTAGTCACTTGGA
TCCTAATGTGCCTTATCTTTTAGATCGTTTTCAGGGGCTTTCCTTTGAAGAATTGAGAAGCATATCTGTTAAGGATGACA
TGAAACGAAAGCTACGATATTTTATCGATGACCTCTATGATAATTATGTTGGAATACATCTTAAAAGTAAGAAATTTATT
GATAATCTAAATTCTTGGGGCCATATTATGAATAAAGAAGATAGTGCTGACTAG

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(83-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J7SI19

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

62.846

98.444

0.619