Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QY487_RS01785 Genome accession   NZ_CP129459
Coordinates   328328..328765 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain SSF6     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 323328..333765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY487_RS01750 (QY487_01750) - 323917..324078 (-) 162 Protein_304 hypothetical protein -
  QY487_RS01755 (QY487_01755) - 324195..325397 (+) 1203 WP_043866820.1 GTP-binding protein -
  QY487_RS01760 (QY487_01760) - 325462..326598 (+) 1137 WP_077721769.1 zinc-dependent alcohol dehydrogenase -
  QY487_RS01765 (QY487_01765) - 326613..327047 (+) 435 WP_021494203.1 RDD family protein -
  QY487_RS01770 (QY487_01770) - 327120..327440 (+) 321 WP_015388719.1 YckD family protein -
  QY487_RS19250 - 327544..327735 (+) 192 WP_071392145.1 family 1 glycosylhydrolase -
  QY487_RS01775 (QY487_01775) - 327660..327889 (+) 230 Protein_310 family 1 glycosylhydrolase -
  QY487_RS01780 (QY487_01780) nin/comJ 327908..328306 (-) 399 WP_094247249.1 competence protein ComJ Regulator
  QY487_RS01785 (QY487_01785) nucA/comI 328328..328765 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  QY487_RS01790 (QY487_01790) hxlB 329126..329683 (-) 558 WP_014304318.1 6-phospho-3-hexuloisomerase -
  QY487_RS01795 (QY487_01795) hxlA 329680..330315 (-) 636 WP_014304319.1 3-hexulose-6-phosphate synthase -
  QY487_RS01800 (QY487_01800) - 330547..330909 (+) 363 WP_014304320.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=853422 QY487_RS01785 WP_003156588.1 328328..328765(-) (nucA/comI) [Bacillus velezensis strain SSF6]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=853422 QY487_RS01785 WP_003156588.1 328328..328765(-) (nucA/comI) [Bacillus velezensis strain SSF6]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641