Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   V6U64_RS07745 Genome accession   NZ_CP145862
Coordinates   1691909..1693894 (-) Length   661 a.a.
NCBI ID   WP_049545800.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1686909..1698894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U64_RS07715 (V6U64_07715) rsmI 1688114..1688980 (-) 867 WP_410536453.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  V6U64_RS07720 (V6U64_07720) yabA 1688983..1689303 (-) 321 WP_002887582.1 DNA replication initiation control protein YabA -
  V6U64_RS07725 (V6U64_07725) yaaT 1689290..1690096 (-) 807 WP_410536455.1 regulatory iron-sulfur-containing complex subunit RicT Regulator
  V6U64_RS07730 (V6U64_07730) - 1690093..1690968 (-) 876 WP_037601963.1 DNA polymerase III subunit delta' -
  V6U64_RS07735 (V6U64_07735) tmk 1690977..1691606 (-) 630 WP_410536458.1 dTMP kinase -
  V6U64_RS07745 (V6U64_07745) recP/tkt 1691909..1693894 (-) 1986 WP_049545800.1 transketolase Machinery gene
  V6U64_RS07750 (V6U64_07750) tpiA 1694156..1694914 (-) 759 WP_002890214.1 triose-phosphate isomerase -
  V6U64_RS07755 (V6U64_07755) tuf 1695168..1696364 (-) 1197 WP_410536461.1 elongation factor Tu -
  V6U64_RS07760 (V6U64_07760) ftsW 1696601..1697881 (-) 1281 WP_410536463.1 cell division peptidoglycan polymerase FtsW -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 70834.54 Da        Isoelectric Point: 4.8434

>NTDB_id=853415 V6U64_RS07745 WP_049545800.1 1691909..1693894(-) (recP/tkt) [Streptococcus salivarius strain KSS4]
MTFDAIDQMAVSTIRSLSIEAIQAANSGHPGLPMGAAPMAYVLWNHVMNVNPKTSRNWTNRDRFVLSAGHGSALLYSLLH
LSGYDVTMDDLKNFRQWGSKTPGHPEVNHTDGVEATSGPLGQGIANAVGMAMAEAHLAAKFNKPGFDIVDHYTYALHGDG
CLMEGVSQEAASLAGHLKLGKLVLLYDSNDISLDGPTSMAFTEDVKAKFEAYGWQHILVKDGNDLEAIAKAIEEAKAETD
KPSIIEVKTIIGYGAEGQGTSAVHGAPIGQDGIDHAKGVYGYDAPAFTVPDEVARRFEVGIKFRGEAAENAWQTKFAEYE
TAYPELAAEYKAAFANEPVHVNLNAHELGSAVASRVSSQQAIQQISEQVPSFWGGSADLSASNNTMVKAESDFQAANYAG
RNIWFGVREFAMAAAMNGIALHGGTRVYGGTFFVFSNYLLPAVRMAALQNLPVTYVMTHDSVAVGEDGPTHEPIEQLASV
RSMPNLNVIRPADGNETNAAWKRALAETERPTMLVLTRQNLPVLDGTAENAETGVNKGAYIISEAKGDLDGIIIATGSEV
KLALDTQAALEAEGVHVRVVSMPSQNLFDEQDAAYKEEVLPAAVTKRLAIEAGTSFGWGKYVGLAGKTLTIDTWGASAPG
DRIFKEYGFTVENASQLYKSL

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=853415 V6U64_RS07745 WP_049545800.1 1691909..1693894(-) (recP/tkt) [Streptococcus salivarius strain KSS4]
ATGACTTTTGATGCAATTGACCAAATGGCGGTCAGCACTATTCGTTCGCTTTCGATCGAGGCAATTCAAGCCGCGAATTC
TGGGCACCCAGGTCTTCCTATGGGTGCAGCGCCAATGGCTTATGTGCTTTGGAACCATGTGATGAATGTCAATCCAAAGA
CTAGCCGTAACTGGACAAACCGTGACCGTTTTGTTCTTTCTGCTGGTCATGGTTCTGCCTTGCTTTATAGTCTATTGCAC
CTTTCTGGCTATGATGTGACAATGGACGACTTGAAGAATTTCCGTCAATGGGGCTCTAAGACTCCAGGTCACCCTGAAGT
TAACCATACTGATGGTGTTGAAGCAACATCAGGTCCTCTTGGTCAAGGGATTGCTAATGCTGTAGGTATGGCAATGGCTG
AAGCACACTTGGCAGCTAAATTTAACAAACCTGGTTTTGATATTGTTGACCATTATACTTATGCCCTCCATGGCGATGGT
TGTTTGATGGAAGGTGTTTCTCAAGAAGCTGCCAGTCTTGCTGGTCACCTTAAACTTGGTAAGTTGGTGCTTCTTTACGA
TTCAAATGATATCTCACTTGATGGACCAACTTCAATGGCTTTCACAGAAGATGTTAAGGCTAAGTTTGAAGCTTATGGTT
GGCAACACATTCTTGTCAAAGATGGTAATGATTTGGAAGCTATTGCTAAAGCCATCGAAGAAGCTAAGGCTGAGACAGAT
AAACCATCTATCATTGAAGTTAAGACAATCATTGGTTATGGAGCTGAAGGGCAAGGAACATCAGCTGTCCACGGTGCTCC
AATTGGTCAAGATGGCATTGATCACGCAAAAGGTGTTTATGGTTATGATGCACCGGCATTTACAGTTCCAGATGAAGTTG
CTCGTCGTTTCGAAGTTGGTATTAAATTCCGTGGTGAAGCTGCTGAAAATGCTTGGCAAACTAAATTTGCAGAATATGAA
ACTGCTTACCCAGAATTGGCTGCTGAATACAAGGCTGCCTTTGCAAATGAACCTGTACACGTTAACTTGAATGCTCATGA
ATTGGGTTCAGCAGTAGCTAGCCGTGTATCAAGCCAACAAGCTATCCAACAGATTTCTGAACAAGTTCCTTCATTCTGGG
GAGGTTCAGCAGACCTTTCAGCTTCTAACAATACTATGGTTAAGGCTGAGTCTGATTTCCAAGCAGCTAACTATGCTGGA
CGTAATATTTGGTTTGGTGTACGTGAGTTTGCTATGGCAGCAGCTATGAATGGTATTGCTCTTCATGGTGGTACTCGTGT
TTATGGTGGTACTTTCTTCGTCTTCTCAAACTACTTGCTTCCAGCAGTACGTATGGCAGCACTTCAAAACTTGCCAGTAA
CTTATGTTATGACTCACGACTCAGTAGCAGTTGGTGAAGATGGACCTACTCACGAACCAATCGAACAATTGGCAAGTGTG
CGTTCAATGCCTAACCTTAACGTTATCCGTCCTGCAGATGGTAATGAAACTAATGCTGCATGGAAACGTGCCTTGGCTGA
GACTGAACGTCCAACAATGCTAGTCTTGACACGTCAAAACTTGCCAGTCCTTGATGGTACAGCTGAAAATGCTGAAACTG
GTGTCAATAAAGGGGCTTACATCATCTCAGAAGCTAAAGGTGATCTTGATGGTATCATCATTGCGACTGGTTCTGAAGTG
AAATTGGCTCTTGATACTCAAGCGGCTCTTGAAGCTGAAGGCGTGCATGTCCGTGTTGTTTCAATGCCATCACAAAATCT
CTTTGATGAACAAGATGCTGCATATAAAGAAGAAGTTCTTCCAGCAGCTGTTACAAAACGTTTGGCTATTGAAGCCGGAA
CTAGCTTTGGTTGGGGCAAATATGTTGGTCTTGCAGGTAAAACACTTACTATTGATACTTGGGGTGCATCAGCACCTGGT
GACCGTATCTTTAAGGAATATGGTTTCACTGTTGAAAATGCAAGTCAACTTTACAAATCATTGTAA

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(6-334)

Transketolase, C-terminal domain (Transketolase_C)

(552-652)

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

56.687

99.546

0.564