Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   V6U64_RS07475 Genome accession   NZ_CP145862
Coordinates   1636010..1637746 (-) Length   578 a.a.
NCBI ID   WP_002885969.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS4     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1631010..1642746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U64_RS07460 (V6U64_07460) - 1632216..1632917 (-) 702 WP_014634075.1 glucosamine-6-phosphate deaminase -
  V6U64_RS07465 (V6U64_07465) queA 1633069..1634112 (+) 1044 WP_070476548.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  V6U64_RS07470 (V6U64_07470) rcrQ 1634210..1635997 (-) 1788 WP_410532712.1 ABC transporter ATP-binding protein Regulator
  V6U64_RS07475 (V6U64_07475) rcrP 1636010..1637746 (-) 1737 WP_002885969.1 ABC transporter ATP-binding protein Regulator
  V6U64_RS07480 (V6U64_07480) - 1637963..1638295 (-) 333 WP_410539650.1 hypothetical protein -
  V6U64_RS07485 (V6U64_07485) - 1638367..1638693 (-) 327 WP_410537225.1 LysR substrate-binding domain-containing protein -
  V6U64_RS07490 (V6U64_07490) - 1638682..1638855 (-) 174 Protein_1462 LysR family transcriptional regulator -
  V6U64_RS07495 (V6U64_07495) - 1638865..1640418 (-) 1554 WP_037605638.1 BCCT family transporter -
  V6U64_RS07500 (V6U64_07500) - 1640646..1641227 (-) 582 WP_195968915.1 type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein -
  V6U64_RS07505 (V6U64_07505) - 1641285..1641494 (-) 210 Protein_1465 CHAP domain-containing protein -
  V6U64_RS07510 (V6U64_07510) - 1641868..1642125 (-) 258 Protein_1466 type II toxin-antitoxin system Phd/YefM family antitoxin -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 64863.79 Da        Isoelectric Point: 5.5902

>NTDB_id=853412 V6U64_RS07475 WP_002885969.1 1636010..1637746(-) (rcrP) [Streptococcus salivarius strain KSS4]
MAYIWSYLRRYPKWLAMNFTAAILFVIANLGLPTVLARMIDEGINRGDADKLYTYAWVMFGVVLTGIVGRVLLSYAVSKL
TTTMVQVMRNDIYAKLQEYSHHEYEQIGVSSLVTRITSDAFVLMQFAEQILKMGVITPLMMVSSVFLILTTSPSLAWIVA
ISLPFLAVVVWYVAVKTRPLSEKQQATLDKINQYARENLTGLRVIRAFAREDFQEKKFASENAVYADNSNKLFKLTGLTE
PLFVQIIIAMIVAIVWFALEPLGSGTLAIGDLVAFIEYSFHALLSFLFLANLFTMYPRTAVSSERLQEIMDMPISINPNE
DGVTETETKGYLEFDNVTFAYPGETESPVLHNISFKAKPGETIAFIGSTGSGKSSLVQLIPRFYDVTLGRILVDGVDVRD
YNLKALRRKIGFIPQKALLFTGTIGENIRYGKENASHEELNQATDVAQAKEFIDSKEERYDSHLAEGGSNLSGGQKQRLS
IARAVVKRPDLYIFDDSFSALDYKTDATLRRRLKEVTQDATVLIVAQRVGTIMDADQIIVLDKGEIVGRGRHEELMESNE
IYREIANSQLNQKSLTED

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=853412 V6U64_RS07475 WP_002885969.1 1636010..1637746(-) (rcrP) [Streptococcus salivarius strain KSS4]
ATGGCTTATATTTGGTCTTATCTCAGACGTTATCCTAAGTGGCTAGCAATGAATTTTACAGCGGCTATTTTGTTTGTTAT
TGCTAACCTGGGTCTGCCGACGGTTCTTGCCAGAATGATTGATGAGGGGATTAACCGTGGAGATGCTGACAAGCTTTATA
CCTATGCTTGGGTCATGTTCGGTGTGGTCTTGACTGGGATTGTTGGTCGTGTGCTCTTGTCCTATGCGGTTAGTAAGTTG
ACGACTACAATGGTCCAGGTCATGCGTAATGACATTTACGCTAAGCTTCAGGAGTATTCCCACCATGAGTACGAGCAGAT
TGGGGTATCCTCTTTGGTGACTCGTATTACATCTGATGCTTTTGTTCTCATGCAATTTGCAGAACAGATTCTAAAGATGG
GTGTCATTACTCCTCTGATGATGGTTTCCAGTGTCTTCTTAATTTTGACGACAAGTCCATCTTTGGCTTGGATTGTGGCA
ATTTCCTTGCCTTTCCTAGCCGTAGTAGTCTGGTATGTAGCGGTAAAAACACGTCCGCTTTCTGAGAAGCAACAGGCAAC
ACTCGACAAGATTAACCAGTATGCTCGTGAAAATCTGACTGGACTTCGTGTCATCCGAGCTTTCGCTAGAGAAGATTTTC
AAGAGAAGAAGTTTGCTTCTGAAAATGCTGTCTATGCGGATAATTCAAACAAGCTCTTTAAATTAACTGGTTTGACTGAG
CCACTTTTTGTGCAAATCATCATCGCCATGATTGTGGCAATTGTTTGGTTTGCTCTTGAGCCATTAGGTTCTGGGACGTT
GGCAATCGGGGATTTGGTTGCCTTTATTGAGTACAGTTTCCATGCGCTATTGTCTTTCCTTTTCCTAGCCAACCTCTTTA
CCATGTATCCTCGTACGGCGGTATCTAGTGAACGTCTGCAGGAAATTATGGACATGCCTATTTCTATCAATCCAAATGAA
GATGGGGTGACAGAGACTGAGACTAAGGGATATTTGGAGTTTGACAATGTAACCTTTGCCTATCCTGGTGAAACTGAGAG
TCCTGTCCTACACAATATTTCTTTCAAGGCTAAACCCGGTGAAACCATTGCCTTTATTGGATCTACGGGTTCAGGAAAAT
CATCACTTGTGCAGTTGATTCCACGCTTTTATGATGTAACACTTGGACGCATTCTTGTTGATGGTGTGGATGTTCGTGAC
TATAATCTTAAGGCTCTTCGTCGTAAGATTGGCTTTATTCCACAAAAAGCCCTGCTCTTTACAGGAACCATCGGTGAAAA
TATTCGATATGGTAAGGAAAATGCCAGTCATGAAGAATTGAATCAAGCTACGGATGTCGCTCAGGCGAAGGAATTCATCG
ACAGCAAGGAAGAACGCTACGATTCTCACTTGGCTGAGGGTGGTAGCAACCTTTCTGGGGGACAGAAGCAGCGTTTGTCA
ATTGCACGTGCTGTGGTTAAACGTCCTGATCTTTACATCTTTGATGATTCCTTCTCTGCCTTGGACTACAAAACTGATGC
GACCTTGCGCCGTCGTCTGAAAGAAGTGACCCAGGATGCGACAGTCTTGATTGTGGCTCAACGTGTGGGTACTATCATGG
ATGCAGACCAGATTATCGTTCTTGATAAGGGTGAAATCGTTGGTCGTGGCCGTCACGAAGAGCTTATGGAAAGCAATGAG
ATTTACCGTGAAATTGCTAATTCTCAATTGAATCAAAAGAGTCTTACGGAAGACTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(350-497)

ABC transporter transmembrane region (ABC_membrane)

(17-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.15

92.215

0.37