Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   V6U64_RS07470 Genome accession   NZ_CP145862
Coordinates   1634210..1635997 (-) Length   595 a.a.
NCBI ID   WP_410532712.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS4     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1629210..1640997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U64_RS07450 (V6U64_07450) - 1630062..1630772 (+) 711 WP_014634077.1 LytR/AlgR family response regulator transcription factor -
  V6U64_RS07455 (V6U64_07455) - 1630772..1632067 (+) 1296 WP_014634076.1 GHKL domain-containing protein -
  V6U64_RS07460 (V6U64_07460) - 1632216..1632917 (-) 702 WP_014634075.1 glucosamine-6-phosphate deaminase -
  V6U64_RS07465 (V6U64_07465) queA 1633069..1634112 (+) 1044 WP_070476548.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  V6U64_RS07470 (V6U64_07470) rcrQ 1634210..1635997 (-) 1788 WP_410532712.1 ABC transporter ATP-binding protein Regulator
  V6U64_RS07475 (V6U64_07475) rcrP 1636010..1637746 (-) 1737 WP_002885969.1 ABC transporter ATP-binding protein Regulator
  V6U64_RS07480 (V6U64_07480) - 1637963..1638295 (-) 333 WP_410539650.1 hypothetical protein -
  V6U64_RS07485 (V6U64_07485) - 1638367..1638693 (-) 327 WP_410537225.1 LysR substrate-binding domain-containing protein -
  V6U64_RS07490 (V6U64_07490) - 1638682..1638855 (-) 174 Protein_1462 LysR family transcriptional regulator -
  V6U64_RS07495 (V6U64_07495) - 1638865..1640418 (-) 1554 WP_037605638.1 BCCT family transporter -

Sequence

Protein


Download         Length: 595 a.a.        Molecular weight: 66430.59 Da        Isoelectric Point: 5.5171

>NTDB_id=853411 V6U64_RS07470 WP_410532712.1 1634210..1635997(-) (rcrQ) [Streptococcus salivarius strain KSS4]
MKKNKMKTSHSSSFGRLWSYLQAYRFPLYLAIFLKIVSVIMSVLEPVVIGLAITELTKNTLAIIKGVEGAHINVSYVGLV
LVVYLLRGLIYELAAYYSNYFMTNAVQATVQDMRNEMTEKINRTSVSYFDKHQFGDLLGRFTSDVETVSNALQQSFLQVV
NAVFTLALVIGTVLYLNLQLGAIVVITIPITFFGARYIMSKSQPYFKQQADALGTLNGFVQENLTGFNVLKLFGREDRSL
DDFKKITEDLQKVGFKANFISGLMMPVLNGLSDLTYLIVAVLGGLQVLAGHLTIGNMQAFVQYVWQINQPIQNLTQLAGQ
LQSAKSSLDRIFQLMDEPDEANDATEVLEGDLTGQVSFKHVDFQYVADKPLIRDFNLEVNPGEMVAIVGPTGAGKSTIIN
LLMRFYDVTAGSISVDGHDIRNLSRQDYRKQFGMVLQDAWLFEGTIKENLRFGNLDATDEEIVEAAKAANVDHFIRTLPG
GYNMEMNQESSNISLGQKQLLTIARALLADPKILILDEATSSVDTRLELLIQKAMKTLMQGRTSFVIAHRLSTIQEADKI
LVLKDGQIIEQGNHESLLADKGFYYDLYNSQFAEK

Nucleotide


Download         Length: 1788 bp        

>NTDB_id=853411 V6U64_RS07470 WP_410532712.1 1634210..1635997(-) (rcrQ) [Streptococcus salivarius strain KSS4]
ATGAAGAAAAATAAAATGAAAACAAGTCATTCCTCAAGTTTTGGCCGCCTTTGGTCCTACTTGCAGGCTTATCGTTTCCC
ACTTTACCTAGCTATTTTCCTGAAAATTGTTAGTGTTATCATGAGTGTCCTTGAGCCAGTGGTCATTGGTTTAGCTATTA
CCGAGTTGACTAAAAATACGCTGGCCATCATCAAAGGTGTGGAAGGCGCTCATATCAACGTCTCCTATGTTGGTTTGGTT
TTGGTTGTTTATCTCTTGCGTGGTCTTATTTATGAGTTGGCTGCCTACTATTCCAACTATTTCATGACCAATGCCGTGCA
AGCGACGGTTCAAGATATGCGAAATGAGATGACCGAGAAAATCAATCGTACCTCAGTGTCATACTTTGATAAGCACCAGT
TTGGGGATCTCTTAGGCCGCTTTACCAGTGACGTCGAGACAGTATCAAATGCCTTGCAGCAGTCATTCTTGCAGGTTGTT
AATGCCGTCTTTACTCTAGCCTTGGTTATTGGAACAGTGCTTTACCTTAATCTTCAATTGGGAGCTATAGTTGTCATCAC
TATTCCGATTACTTTCTTTGGTGCCCGCTACATCATGAGTAAGTCTCAGCCCTACTTTAAACAACAAGCTGATGCTCTAG
GTACTCTTAATGGTTTTGTTCAGGAAAATCTGACTGGCTTCAATGTACTTAAGCTTTTTGGGCGTGAGGATAGATCCTTG
GATGATTTTAAAAAAATCACGGAAGATCTTCAGAAGGTGGGCTTTAAGGCCAATTTCATTTCAGGACTTATGATGCCGGT
TCTTAACGGTTTATCTGACTTGACCTATCTCATTGTTGCTGTTCTAGGTGGTTTGCAAGTCTTGGCTGGTCACTTGACGA
TTGGTAATATGCAGGCCTTTGTTCAGTATGTTTGGCAGATTAACCAACCCATTCAGAACTTGACTCAGTTGGCTGGACAA
TTGCAGAGTGCTAAATCTTCCTTGGACCGTATTTTCCAACTCATGGATGAACCAGACGAGGCTAATGATGCTACTGAGGT
GCTTGAAGGAGATTTGACTGGGCAAGTTAGCTTTAAGCATGTGGATTTCCAGTATGTGGCTGATAAACCTTTGATTCGTG
ACTTTAATCTTGAGGTTAATCCTGGAGAAATGGTGGCCATTGTCGGTCCTACCGGTGCCGGAAAATCAACCATTATCAAC
CTCCTCATGCGTTTCTATGATGTGACTGCTGGTTCTATTTCGGTTGACGGTCACGATATCCGTAACCTGTCACGTCAGGA
TTATCGTAAACAGTTTGGTATGGTGCTTCAGGATGCTTGGCTCTTTGAAGGAACTATCAAGGAAAATCTTCGCTTTGGTA
ATCTTGATGCGACTGACGAAGAAATTGTTGAAGCCGCTAAGGCAGCCAATGTGGACCACTTTATCCGTACACTACCTGGT
GGTTACAACATGGAAATGAACCAGGAATCAAGTAACATCTCACTAGGACAAAAGCAACTTTTGACCATTGCGCGTGCGCT
TTTGGCTGATCCTAAAATCTTGATTTTGGACGAGGCGACCTCATCGGTTGATACCCGTCTGGAACTCTTGATTCAAAAAG
CTATGAAGACCCTTATGCAAGGTCGAACAAGCTTTGTCATTGCCCACCGCCTGTCAACTATTCAAGAGGCAGACAAGATT
TTGGTCCTTAAAGATGGTCAAATCATCGAACAAGGAAATCATGAATCCCTCCTTGCAGATAAAGGCTTCTATTACGACTT
GTATAATAGCCAGTTTGCAGAGAAATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(29-310)

ABC transporter (ABC_tran)

(373-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

42.23

99.496

0.42