Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   V6U64_RS05855 Genome accession   NZ_CP145862
Coordinates   1305759..1307960 (-) Length   733 a.a.
NCBI ID   WP_073685455.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1300759..1312960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U64_RS05830 (V6U64_05830) - 1301699..1302460 (-) 762 WP_022496510.1 hypothetical protein -
  V6U64_RS05835 (V6U64_05835) nth 1302588..1303232 (-) 645 WP_151404534.1 endonuclease III -
  V6U64_RS05840 (V6U64_05840) - 1303232..1303930 (-) 699 WP_410536189.1 DnaD domain-containing protein -
  V6U64_RS05845 (V6U64_05845) metA 1304002..1304946 (-) 945 WP_410536191.1 homoserine O-succinyltransferase -
  V6U64_RS05850 (V6U64_05850) - 1305119..1305637 (-) 519 WP_037601084.1 adenine phosphoribosyltransferase -
  V6U64_RS05855 (V6U64_05855) recJ 1305759..1307960 (-) 2202 WP_073685455.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  V6U64_RS05860 (V6U64_05860) - 1308271..1308675 (-) 405 WP_073685421.1 GNAT family N-acetyltransferase -
  V6U64_RS05865 (V6U64_05865) - 1308946..1309713 (-) 768 WP_410536193.1 SDR family NAD(P)-dependent oxidoreductase -
  V6U64_RS05870 (V6U64_05870) rnz 1309713..1310642 (-) 930 WP_073685418.1 ribonuclease Z -
  V6U64_RS05875 (V6U64_05875) - 1310674..1311315 (-) 642 WP_410536195.1 cystathionine beta-lyase -
  V6U64_RS05880 (V6U64_05880) hflX 1311308..1312546 (-) 1239 WP_013990737.1 GTPase HflX -

Sequence

Protein


Download         Length: 733 a.a.        Molecular weight: 82247.47 Da        Isoelectric Point: 4.3568

>NTDB_id=853401 V6U64_RS05855 WP_073685455.1 1305759..1307960(-) (recJ) [Streptococcus salivarius strain KSS4]
MITSTYDWKINTKEPDAGFFKLAKEHGLAETAAKIVYERGITTEDALEDFLKADLSHLHDPYLLHDMDKAVARIRQAIEN
YEQILVYGDYDADGMTSASIVKEALEMMGAEARVYLPNRFTDGYGPNESVYKYFIEQEGISLIVTVDNGVAGNDAIAYAQ
EQGVDVIVTDHHSMPAQLPDAYAIVHPEHPDADYPFKYLAGCGVAFKLATALLETIPTEMLDLVAIGTIADMVSLTDENR
IMVKVGLEILKTTERIGLQELLRISDVDPTTISEETVGFKLAPQLNALGRLDDPNPAIELLTGFDDEEAQAIALEINAKN
EERKEVVQKIFDEAMTMVDLDKPVQVLAKEGWHPGVLGIVAGRIMDQISQTVVVLNIEDGLAKGSARSLESINIFHALDE
HRDIFTAFGGHAGAAGMTLPEENLGRLSDILCHYVYDNDIDTSAKNTLNLDEELQLSELSLDTIKSLEKLAPFGMDNKKP
VFWLHDITVTQARTMGQNGAHLKFKVKQGKDSFDVVAFNKGHLLQEFQQAQGLELAVTLSVNVWNGQTTLQLMLEDARVD
GVQLFDFRSKNMALPEGLPTVEEALDTEPAVVLNTLPDSATEVKEWFEGKDFQAIYFKNSIKEAYYLTGYGTREQFARLY
KTIYQFPEFDVRYKLDELSHYLKIDKILLIKMIQIFDELDFVTIDNGVMTVNKEAEKREIEDSKIFQDLKHLVKFQELMA
LGTPQEIYDWLYK

Nucleotide


Download         Length: 2202 bp        

>NTDB_id=853401 V6U64_RS05855 WP_073685455.1 1305759..1307960(-) (recJ) [Streptococcus salivarius strain KSS4]
ATGATTACATCAACGTATGATTGGAAAATAAACACAAAAGAGCCAGATGCTGGCTTTTTTAAACTTGCCAAAGAACATGG
ACTGGCAGAAACAGCAGCCAAGATTGTCTATGAACGTGGCATTACGACAGAAGATGCTCTTGAAGACTTTCTAAAGGCTG
ATTTATCACATCTTCATGATCCTTATCTGCTTCATGATATGGATAAGGCAGTGGCTAGAATTCGTCAGGCCATTGAAAAT
TATGAACAAATCTTAGTCTATGGAGACTATGATGCAGATGGTATGACATCAGCATCGATTGTTAAGGAAGCTCTTGAAAT
GATGGGCGCTGAAGCTCGAGTCTATTTGCCTAACCGGTTTACAGATGGTTATGGGCCAAACGAAAGTGTCTACAAGTACT
TCATTGAACAGGAAGGCATTTCACTCATTGTTACAGTGGATAATGGGGTAGCGGGGAATGATGCTATCGCTTATGCGCAA
GAGCAAGGTGTGGACGTTATCGTTACAGACCATCACAGTATGCCGGCACAACTTCCAGATGCCTATGCCATTGTCCATCC
AGAGCATCCAGATGCCGATTATCCTTTTAAGTATTTGGCAGGTTGTGGTGTAGCTTTCAAATTGGCAACTGCCCTCCTTG
AAACTATTCCTACTGAGATGTTGGACTTGGTAGCCATTGGTACCATTGCCGATATGGTTAGCCTAACGGATGAAAATCGT
ATTATGGTCAAGGTCGGCCTGGAAATTCTAAAGACTACTGAGCGTATTGGACTGCAAGAGTTACTCCGTATTTCAGATGT
AGACCCAACAACGATTTCTGAAGAAACGGTAGGATTTAAACTGGCCCCTCAACTCAATGCTTTGGGGCGCTTAGATGATC
CAAATCCAGCCATTGAACTGCTGACCGGATTTGACGATGAAGAAGCCCAAGCCATTGCTCTGGAAATCAATGCTAAAAAT
GAAGAACGTAAGGAAGTTGTTCAAAAAATCTTTGATGAAGCCATGACTATGGTGGATTTGGACAAACCTGTTCAGGTTTT
GGCCAAGGAAGGTTGGCATCCTGGCGTTCTAGGTATTGTGGCTGGGCGCATCATGGATCAAATCAGCCAGACAGTAGTGG
TTTTGAATATTGAAGATGGCTTGGCTAAGGGTTCAGCCCGTAGTTTGGAATCTATCAATATCTTCCATGCGCTTGATGAA
CACCGAGACATCTTTACTGCATTTGGAGGACATGCTGGAGCGGCGGGGATGACCCTTCCAGAAGAAAATCTTGGTCGACT
GTCAGATATTTTGTGTCATTATGTCTACGATAATGACATTGATACGAGTGCCAAAAATACGTTAAATTTAGACGAGGAGC
TCCAACTCAGTGAGCTTAGCTTGGATACCATTAAGAGCCTAGAAAAACTAGCACCTTTTGGTATGGATAATAAAAAGCCA
GTCTTTTGGCTACATGATATTACCGTTACTCAAGCTAGGACTATGGGACAAAACGGAGCCCATCTTAAGTTTAAGGTGAA
GCAAGGCAAGGATAGCTTTGATGTTGTCGCTTTTAACAAAGGTCATTTGCTTCAAGAATTCCAACAAGCTCAGGGGTTGG
AATTGGCAGTGACCCTGTCCGTTAATGTATGGAATGGTCAGACAACGCTCCAGCTCATGCTAGAAGATGCGCGTGTGGAT
GGTGTTCAGTTATTTGATTTTCGCTCAAAAAATATGGCACTACCTGAAGGCCTACCAACGGTAGAAGAAGCATTAGACAC
TGAACCTGCGGTTGTCCTCAACACCTTACCTGATTCAGCGACAGAAGTAAAAGAGTGGTTTGAAGGTAAAGATTTCCAAG
CTATCTATTTTAAAAATAGTATTAAGGAAGCCTATTATCTGACAGGTTATGGAACGAGAGAGCAATTTGCAAGACTCTAT
AAAACCATTTACCAATTCCCAGAATTCGATGTCCGCTATAAACTGGATGAGCTCAGTCATTACCTTAAAATCGATAAGAT
ACTTCTGATTAAGATGATTCAGATTTTTGATGAATTGGATTTTGTGACTATTGATAATGGTGTTATGACAGTCAATAAAG
AAGCTGAAAAACGTGAGATTGAGGACAGCAAGATTTTCCAAGATCTTAAACATCTCGTCAAGTTCCAAGAACTTATGGCT
TTAGGGACACCACAGGAAATTTATGACTGGCTTTATAAGTAG

Domains

Predicted by InterProScan.

DHHA1 domain (DHHA1)

(317-431)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(584-731)

RecJ OB domain (RecJ_OB)

(451-556)

DHH family (DHH)

(83-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

67.527

100

0.678
  recJ Bacillus subtilis subsp. subtilis str. 168

37.931

100

0.405