Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   V6U64_RS05800 Genome accession   NZ_CP145862
Coordinates   1296175..1297845 (-) Length   556 a.a.
NCBI ID   WP_195187923.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1291175..1302845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U64_RS05765 (V6U64_05765) - 1291213..1291905 (-) 693 WP_002884137.1 phosphoglycerate mutase -
  V6U64_RS05770 (V6U64_05770) - 1292161..1293096 (+) 936 WP_183139605.1 dihydroorotate oxidase -
  V6U64_RS05775 (V6U64_05775) - 1293158..1293358 (-) 201 WP_002883994.1 hypothetical protein -
  V6U64_RS05780 (V6U64_05780) - 1293418..1293693 (-) 276 WP_002884048.1 HU family DNA-binding protein -
  V6U64_RS05785 (V6U64_05785) - 1293830..1294402 (-) 573 WP_002884131.1 YpmS family protein -
  V6U64_RS05790 (V6U64_05790) - 1294395..1295270 (-) 876 WP_201712192.1 SGNH/GDSL hydrolase family protein -
  V6U64_RS05795 (V6U64_05795) - 1295263..1296105 (-) 843 WP_410536185.1 DegV family protein -
  V6U64_RS05800 (V6U64_05800) recN 1296175..1297845 (-) 1671 WP_195187923.1 DNA repair protein RecN Machinery gene
  V6U64_RS05805 (V6U64_05805) - 1297854..1298300 (-) 447 WP_002890762.1 arginine repressor -
  V6U64_RS05810 (V6U64_05810) - 1298287..1299114 (-) 828 WP_002884054.1 TlyA family RNA methyltransferase -
  V6U64_RS05815 (V6U64_05815) - 1299107..1299979 (-) 873 WP_155164672.1 polyprenyl synthetase family protein -
  V6U64_RS05820 (V6U64_05820) - 1299979..1300194 (-) 216 WP_002884058.1 exodeoxyribonuclease VII small subunit -
  V6U64_RS05825 (V6U64_05825) xseA 1300184..1301512 (-) 1329 WP_410536187.1 exodeoxyribonuclease VII large subunit -
  V6U64_RS05830 (V6U64_05830) - 1301699..1302460 (-) 762 WP_022496510.1 hypothetical protein -

Sequence

Protein


Download         Length: 556 a.a.        Molecular weight: 62334.43 Da        Isoelectric Point: 4.5897

>NTDB_id=853400 V6U64_RS05800 WP_195187923.1 1296175..1297845(-) (recN) [Streptococcus salivarius strain KSS4]
MLLEITIKNFAIIEEISLNFENGMTVLTGETGAGKSIIIDAMNLMLGARASSEVVRHSASKAEIQGFFSIEQNPALVSIL
EDNGIPVEDELIIRREIFQNGRSVSRINGQMVNLTTLKAVGHFLVDIHGQHDQEELMKPALHITMLDAFGDKEFFQTKKE
YQEYFDRYRELRKAVLEKQKNEQEHKARIEMLAFQIAEIEAVSLKSGEDLALMKERDKLLNHKQIADTLTNAYVMLDNED
FSSLSNVRSAMNDLQSLEEYDSDYKELSGNLSEAYYVLEDVTKQLGDLLDHLDFDAGRLQEIEHRLDTINAITRKYGGTV
DDVLDYLENSSKEYNLLTGNSSSSDAMEQELKQLEKDLLASAETLQTARHQIATALEAEIKNELCDLYMDKADFKVTFTK
GKFNRDGNEQVEFYISTNPGEGFKPLVKVASGGELSRLMLAIKSAFARKEDKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
SHGQVLAISHLPQVIAIADYQFFISKESDNETTVSRVRLLTPEERVQEIAKMLAGDNVTEAALSQARALLKVDDSL

Nucleotide


Download         Length: 1671 bp        

>NTDB_id=853400 V6U64_RS05800 WP_195187923.1 1296175..1297845(-) (recN) [Streptococcus salivarius strain KSS4]
ATGCTTCTCGAAATTACGATAAAGAATTTCGCAATTATTGAAGAGATTTCTCTAAACTTTGAGAATGGTATGACCGTCCT
TACTGGTGAAACAGGTGCTGGTAAGTCCATTATTATAGATGCCATGAATCTTATGTTGGGCGCACGTGCTTCTAGCGAAG
TCGTCCGTCATTCAGCATCTAAGGCTGAAATTCAGGGCTTCTTTTCAATCGAACAAAATCCTGCCTTGGTTAGTATCTTG
GAAGATAATGGGATTCCTGTTGAGGATGAATTGATTATCCGTCGTGAAATCTTTCAAAATGGTAGAAGTGTTAGTCGTAT
CAATGGACAGATGGTCAATTTAACGACGCTTAAAGCCGTTGGGCACTTCTTGGTAGATATCCATGGACAGCATGACCAGG
AAGAACTTATGAAACCTGCTCTGCATATTACTATGCTTGATGCCTTTGGTGACAAGGAATTTTTCCAAACTAAGAAAGAA
TATCAAGAGTATTTTGACCGCTATCGTGAGTTAAGAAAAGCTGTTCTTGAAAAGCAGAAAAATGAGCAGGAGCATAAGGC
TCGAATTGAAATGTTAGCATTTCAGATTGCAGAAATTGAAGCAGTTTCTCTAAAATCAGGAGAAGATTTGGCATTGATGA
AGGAGCGAGACAAGCTTCTTAACCATAAGCAGATTGCGGATACCTTAACCAATGCCTATGTCATGCTGGATAATGAAGAT
TTTTCAAGCCTTTCAAATGTCCGTTCTGCCATGAACGACCTCCAGTCTCTTGAAGAATATGATTCTGATTACAAAGAACT
TTCTGGAAATCTATCAGAAGCCTATTATGTTTTAGAAGATGTCACTAAGCAACTAGGTGACCTTTTGGATCATTTAGATT
TTGATGCTGGACGTTTGCAAGAGATTGAACACCGCTTAGATACGATTAATGCAATTACTCGTAAATATGGTGGGACTGTT
GATGACGTCTTAGATTATCTGGAAAATTCAAGTAAAGAGTACAATCTTCTGACTGGCAATTCCAGTTCGTCAGATGCCAT
GGAACAAGAGCTTAAGCAACTTGAAAAAGACCTGCTGGCGTCTGCAGAGACCCTACAAACGGCACGTCATCAAATTGCTA
CAGCCCTTGAAGCTGAGATTAAGAACGAGTTATGCGATCTTTACATGGATAAGGCTGATTTTAAAGTTACCTTTACTAAA
GGGAAATTTAACCGTGATGGCAATGAACAGGTTGAGTTTTACATTTCAACCAATCCAGGTGAAGGCTTTAAACCGCTTGT
TAAGGTTGCTTCAGGAGGAGAATTATCTCGACTCATGTTAGCGATTAAGTCAGCCTTTGCCCGCAAAGAAGACAAAACAA
GTATTGTCTTTGATGAGGTTGATACTGGCGTTTCAGGTCGTGTTGCCCAAGCCATCGCTCAGAAAATTCATAAGATTGGG
AGTCATGGTCAGGTTTTGGCTATCAGTCACCTTCCACAAGTTATTGCCATTGCTGATTATCAGTTCTTTATTTCTAAGGA
AAGTGATAATGAGACGACTGTCTCTCGTGTTCGTCTCTTGACACCTGAGGAAAGGGTGCAAGAAATTGCTAAGATGTTAG
CAGGTGATAATGTGACGGAGGCTGCCTTGAGCCAAGCAAGAGCCTTGTTAAAGGTGGATGACTCTCTTTAG

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.979

100

0.453