Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   V6U64_RS04990 Genome accession   NZ_CP145862
Coordinates   1106245..1107315 (-) Length   356 a.a.
NCBI ID   WP_410536083.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1101245..1112315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U64_RS04975 (V6U64_04970) pstB 1101967..1102725 (+) 759 WP_002890956.1 phosphate ABC transporter ATP-binding protein PstB -
  V6U64_RS04980 (V6U64_04975) phoU 1102754..1103407 (+) 654 WP_004182526.1 phosphate signaling complex protein PhoU -
  V6U64_RS04985 (V6U64_04980) - 1103541..1106081 (+) 2541 WP_410536081.1 M1 family metallopeptidase -
  V6U64_RS04990 (V6U64_04985) xerS 1106245..1107315 (-) 1071 WP_410536083.1 tyrosine recombinase XerS Machinery gene
  V6U64_RS04995 (V6U64_04990) - 1107575..1108564 (-) 990 WP_021144174.1 lipoate--protein ligase -
  V6U64_RS05000 (V6U64_04995) - 1108688..1109815 (+) 1128 WP_021144175.1 hypothetical protein -
  V6U64_RS05005 (V6U64_05000) glgP 1109926..1112187 (-) 2262 WP_059749159.1 glycogen/starch/alpha-glucan family phosphorylase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41432.52 Da        Isoelectric Point: 9.4644

>NTDB_id=853393 V6U64_RS04990 WP_410536083.1 1106245..1107315(-) (xerS) [Streptococcus salivarius strain KSS4]
MKRELLLEKIEEYKSLMPWFVLEYYQSKLSVPYSFTTLYEYLKEYKRFFDWLIDSGISDAHDIASVDIKTLENLTKKDME
SFVLYLRERPSLNTYSKKQGVSQTTINRTLSALSSLYKYLTEEVEGPDGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETMEFLDYVENEYEVKLSNRAKSSFYKNKERDLAIIALLLASGVRLSEAVNLDLKDINLKMMVIDVTRKGGKRDS
VNVASFAKPYLENYLSIRDKRYKAEKQDLALFLTEYRGVPNRIDASSIEKMVAKYSQDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=853393 V6U64_RS04990 WP_410536083.1 1106245..1107315(-) (xerS) [Streptococcus salivarius strain KSS4]
ATGAAACGTGAACTCTTACTCGAAAAAATTGAAGAATACAAATCTCTAATGCCCTGGTTTGTCTTGGAGTATTATCAGTC
TAAACTATCGGTTCCATATTCTTTTACGACCTTATACGAATACCTTAAGGAATATAAACGCTTTTTTGACTGGTTGATTG
ACTCAGGTATTTCAGATGCTCATGATATTGCCTCAGTTGACATCAAAACCCTGGAAAATCTAACTAAAAAAGACATGGAG
TCATTTGTGCTCTATCTACGTGAACGTCCGTCTTTAAATACCTATTCCAAGAAACAGGGAGTTTCTCAAACAACCATTAA
CCGTACGCTTTCAGCTCTATCTAGTCTCTATAAGTATTTAACTGAGGAGGTCGAGGGTCCTGACGGTGAGCCATATTTCT
ATCGTAACGTCATGAAAAAAGTTTCGACTAAGAAAAAGAAAGAAACCTTGGCTGCGCGTGCTGAGAATATCAAGCAGAAA
CTCTTTCTAGGCGATGAAACCATGGAATTTCTTGATTATGTCGAAAATGAATACGAAGTTAAGCTCTCAAATCGCGCAAA
ATCTTCGTTTTACAAGAATAAAGAACGTGATTTAGCGATAATAGCCTTGCTACTGGCTTCAGGGGTTCGACTTTCTGAGG
CTGTTAACCTGGACCTTAAAGATATCAATTTGAAAATGATGGTCATTGATGTTACTCGAAAAGGTGGCAAACGAGACTCA
GTTAATGTAGCAAGTTTTGCAAAACCTTATCTTGAAAATTATCTTAGTATCCGTGATAAACGCTATAAGGCTGAAAAGCA
AGACCTTGCCCTATTTTTAACGGAATATCGAGGGGTTCCAAACCGTATTGATGCTTCAAGTATCGAAAAAATGGTTGCCA
AATATTCTCAGGATTTCAAGATACGTGTGACTCCCCATAAACTACGACACACTCTGGCAACACGTCTTTATGATGCTACC
AAGTCTCAAGTTTTAGTTAGCCACCAACTTGGCCATGCTTCCACTCAGGTCACTGATCTTTATACTCATATCGTCAATGA
TGAGCAAAAAAATGCTCTAGATAATTTATAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(183-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

83.146

100

0.831