Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE/comE1   Type   Regulator
Locus tag   V6U64_RS02480 Genome accession   NZ_CP145862
Coordinates   477516..478253 (+) Length   245 a.a.
NCBI ID   WP_022496803.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS4     
Function   activate transcription of early competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 472516..483253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U64_RS02465 (V6U64_02465) - 473505..474257 (+) 753 WP_002884666.1 DUF4767 domain-containing protein -
  V6U64_RS02470 (V6U64_02470) tehB 474340..475218 (-) 879 WP_195187604.1 SAM-dependent methyltransferase TehB -
  V6U64_RS02475 (V6U64_02475) - 475998..477302 (-) 1305 WP_410536895.1 matrixin family metalloprotease -
  V6U64_RS02480 (V6U64_02480) comE/comE1 477516..478253 (+) 738 WP_022496803.1 LytR/AlgR family response regulator transcription factor Regulator
  V6U64_RS02485 (V6U64_02485) - 478564..479742 (+) 1179 WP_002884300.1 sensor histidine kinase -
  V6U64_RS02490 (V6U64_02490) - 479854..481233 (+) 1380 WP_410536898.1 hypothetical protein -
  V6U64_RS02495 (V6U64_02495) rpsP 481396..481668 (+) 273 WP_002884675.1 30S ribosomal protein S16 -
  V6U64_RS02500 (V6U64_02500) - 481680..481928 (+) 249 WP_002884680.1 KH domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 28035.97 Da        Isoelectric Point: 4.7123

>NTDB_id=853369 V6U64_RS02480 WP_022496803.1 477516..478253(+) (comE/comE1) [Streptococcus salivarius strain KSS4]
MLSIIVLEDDALQRHRVSRLLDEAVEESKAVVDGITFYEQGQELLDADRGSGKSMVYLLDIDLKNQTKQGLDIGLEIRKE
DLKAQIAFVTAYSEFMPLTFRYKIQALDFVDKSMEDADLKRALVELLDFAYSQVEQETKAQSLTVKTDKNDVNIPYDDIL
YIETAPVPHKLIAHTKSNLVEFYGKIAEVAKLDDIFFQTHRSFVVNVSNVTSVDRTANMVFFEGDESCLLSRTRKKELLE
RLKNR

Nucleotide


Download         Length: 738 bp        

>NTDB_id=853369 V6U64_RS02480 WP_022496803.1 477516..478253(+) (comE/comE1) [Streptococcus salivarius strain KSS4]
ATGCTTTCTATTATCGTCCTTGAAGATGATGCCTTGCAGCGTCATCGTGTTAGCCGTTTATTGGACGAAGCAGTTGAGGA
GTCGAAGGCCGTTGTTGATGGGATTACCTTTTATGAGCAAGGTCAGGAATTGTTAGATGCTGATAGAGGTTCGGGTAAAT
CCATGGTTTATCTTTTGGATATTGACCTTAAAAATCAAACGAAGCAGGGACTAGATATTGGGCTTGAAATCCGTAAGGAA
GACTTGAAAGCACAAATCGCTTTTGTTACAGCCTACTCTGAGTTTATGCCCTTGACCTTCCGTTATAAGATTCAAGCTCT
GGACTTTGTTGATAAATCCATGGAAGATGCAGATCTTAAGAGAGCCTTGGTAGAACTTTTAGATTTTGCGTATTCGCAGG
TTGAACAAGAAACCAAGGCACAGAGTCTAACGGTAAAAACGGATAAAAATGATGTTAATATTCCTTATGATGACATTTTA
TATATTGAAACAGCCCCTGTGCCACATAAGTTGATCGCTCACACCAAGTCAAATCTAGTAGAATTCTATGGAAAAATTGC
AGAAGTAGCGAAATTGGATGATATTTTCTTCCAAACGCATCGCTCTTTTGTTGTCAATGTGAGTAATGTGACAAGTGTGG
ATCGTACGGCTAATATGGTCTTCTTTGAGGGAGACGAGTCATGCCTTCTATCGCGGACACGTAAAAAAGAACTTTTGGAA
CGATTGAAAAATCGTTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-123)

LytTr DNA-binding domain (LytTR)

(152-242)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE/comE1 Streptococcus equinus JB1

37.037

99.184

0.367