Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE/comE1   Type   Regulator
Locus tag   V6U63_RS07540 Genome accession   NZ_CP145861
Coordinates   1667348..1668085 (-) Length   245 a.a.
NCBI ID   WP_021143758.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS3     
Function   activate transcription of early competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1662348..1673085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U63_RS07520 (V6U63_07515) - 1663668..1663916 (-) 249 WP_002884680.1 KH domain-containing protein -
  V6U63_RS07525 (V6U63_07520) rpsP 1663928..1664200 (-) 273 WP_002884675.1 30S ribosomal protein S16 -
  V6U63_RS07530 (V6U63_07525) - 1664367..1665746 (-) 1380 WP_080611859.1 hypothetical protein -
  V6U63_RS07535 (V6U63_07530) - 1665858..1667036 (-) 1179 WP_037598353.1 sensor histidine kinase -
  V6U63_RS07540 (V6U63_07535) comE/comE1 1667348..1668085 (-) 738 WP_021143758.1 LytR/AlgR family response regulator transcription factor Regulator
  V6U63_RS07545 (V6U63_07540) - 1668299..1669672 (+) 1374 WP_410534959.1 matrixin family metalloprotease -
  V6U63_RS07550 (V6U63_07545) tehB 1670452..1671330 (+) 879 WP_145516713.1 SAM-dependent methyltransferase TehB -
  V6U63_RS07555 (V6U63_07550) - 1671413..1672165 (-) 753 WP_349955298.1 DUF4767 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 28132.10 Da        Isoelectric Point: 4.7169

>NTDB_id=853296 V6U63_RS07540 WP_021143758.1 1667348..1668085(-) (comE/comE1) [Streptococcus salivarius strain KSS3]
MLSIIVLEDDALQRHRVGRLLDEAVEESKAVVDGITFYEQGQELLDADRGSGKSMVYLLDIDLKNQTKQGLDIGLEIRKE
DLKAQIAFVTAYSEFMPLTFRYKIQALDFVDKSMEDVDLKRALVELLDFAYSQVEQETKAQSLTVKTDKNDVNIPYDDIL
YIETAPVPHKLIAHTKSNLVEFYGKIAEVAKLDDIFFQTHRSFVVNVNNVTSVDRTANMVFFEENESCLLSRTRKKELLE
RLKNR

Nucleotide


Download         Length: 738 bp        

>NTDB_id=853296 V6U63_RS07540 WP_021143758.1 1667348..1668085(-) (comE/comE1) [Streptococcus salivarius strain KSS3]
ATGCTTTCTATTATCGTCCTTGAAGATGATGCCTTGCAGCGTCATCGTGTTGGTCGTTTATTGGACGAAGCAGTTGAGGA
GTCGAAGGCCGTTGTTGATGGGATTACTTTTTATGAACAGGGTCAGGAATTGTTAGATGCTGATAGAGGTTCGGGTAAAT
CCATGGTTTATCTTTTGGATATTGACCTTAAAAATCAAACTAAGCAGGGACTAGATATTGGGCTTGAAATCCGTAAGGAA
GACTTGAAAGCACAAATTGCCTTTGTTACAGCTTACTCGGAGTTTATGCCCTTGACCTTCCGTTATAAGATTCAAGCTCT
AGACTTTGTCGATAAATCCATGGAAGATGTGGATCTTAAGAGAGCTTTAGTAGAACTTTTAGATTTTGCTTATTCACAGG
TTGAGCAAGAAACCAAGGCACAGAGTCTAACTGTTAAAACGGATAAAAATGATGTTAATATTCCTTATGATGACATTTTA
TACATTGAGACAGCCCCTGTGCCACATAAGTTAATCGCTCATACCAAGTCAAACCTAGTGGAATTCTATGGGAAAATTGC
AGAAGTAGCAAAATTGGATGATATTTTCTTCCAAACGCACCGCTCTTTTGTTGTCAATGTGAATAATGTGACAAGTGTGG
ATCGTACAGCTAATATGGTCTTCTTTGAGGAAAATGAGTCATGCCTCCTATCGCGGACACGTAAAAAGGAACTTTTGGAA
CGTTTGAAAAATCGTTAG

Domains

Predicted by InterProScan.

LytTr DNA-binding domain (LytTR)

(152-242)

Response regulator receiver domain (Response_reg)

(4-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE/comE1 Streptococcus equinus JB1

37.449

99.184

0.371