Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   QUE29_RS15010 Genome accession   NZ_AP027258
Coordinates   3026057..3026572 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain JNE151685     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3021057..3031572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUE29_RS14985 (JNE151685_28600) ygaZ 3021456..3022193 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  QUE29_RS14990 (JNE151685_28610) ygaH 3022183..3022518 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  QUE29_RS14995 (JNE151685_28620) emrR 3022609..3023139 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  QUE29_RS15000 (JNE151685_28630) emrA 3023266..3024438 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  QUE29_RS15005 (JNE151685_28640) emrB 3024455..3025993 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  QUE29_RS15010 (JNE151685_28650) luxS 3026057..3026572 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  QUE29_RS15015 (JNE151685_28660) gshA 3026722..3028278 (-) 1557 WP_097754152.1 glutamate--cysteine ligase -
  QUE29_RS15020 (JNE151685_28670) yqaA 3028351..3028779 (-) 429 WP_001287454.1 YqaA family protein -
  QUE29_RS15025 (JNE151685_28680) yqaB 3028776..3029342 (-) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  QUE29_RS15055 (JNE151685_28690) csrA 3030800..3030985 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=85329 QUE29_RS15010 WP_001130211.1 3026057..3026572(-) (luxS) [Escherichia coli strain JNE151685]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=85329 QUE29_RS15010 WP_001130211.1 3026057..3026572(-) (luxS) [Escherichia coli strain JNE151685]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCACAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment