Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   V6U63_RS04230 Genome accession   NZ_CP145861
Coordinates   850253..851923 (+) Length   556 a.a.
NCBI ID   WP_022496506.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 845253..856923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U63_RS04200 (V6U63_04200) - 845638..846399 (+) 762 WP_022496510.1 hypothetical protein -
  V6U63_RS04205 (V6U63_04205) xseA 846586..847914 (+) 1329 WP_022496509.1 exodeoxyribonuclease VII large subunit -
  V6U63_RS04210 (V6U63_04210) - 847904..848119 (+) 216 WP_002884058.1 exodeoxyribonuclease VII small subunit -
  V6U63_RS04215 (V6U63_04215) - 848119..848991 (+) 873 WP_022496508.1 polyprenyl synthetase family protein -
  V6U63_RS04220 (V6U63_04220) - 848984..849811 (+) 828 WP_022496507.1 TlyA family RNA methyltransferase -
  V6U63_RS04225 (V6U63_04225) - 849798..850244 (+) 447 WP_004182652.1 arginine repressor -
  V6U63_RS04230 (V6U63_04230) recN 850253..851923 (+) 1671 WP_022496506.1 DNA repair protein RecN Machinery gene
  V6U63_RS04235 (V6U63_04235) - 851993..852829 (+) 837 WP_022496505.1 DegV family protein -
  V6U63_RS04240 (V6U63_04240) - 852822..853697 (+) 876 WP_022496504.1 SGNH/GDSL hydrolase family protein -
  V6U63_RS04245 (V6U63_04245) - 853690..854262 (+) 573 WP_022496503.1 YpmS family protein -
  V6U63_RS04250 (V6U63_04250) - 854400..854675 (+) 276 WP_002884048.1 HU family DNA-binding protein -
  V6U63_RS04255 (V6U63_04255) - 854735..854935 (+) 201 WP_002883994.1 hypothetical protein -
  V6U63_RS04260 (V6U63_04260) - 854997..855932 (-) 936 WP_045772084.1 dihydroorotate oxidase -
  V6U63_RS04265 (V6U63_04265) - 856188..856880 (+) 693 WP_002884137.1 phosphoglycerate mutase -

Sequence

Protein


Download         Length: 556 a.a.        Molecular weight: 62352.49 Da        Isoelectric Point: 4.5921

>NTDB_id=853268 V6U63_RS04230 WP_022496506.1 850253..851923(+) (recN) [Streptococcus salivarius strain KSS3]
MLLEITIKNFAIIEEISLNFENGMTVLTGETGAGKSIIIDAMNLMLGARASSEVVRHSASKAEIQGFFSIEQNPALVSIL
EDNGIPVEDELIIRREIFQNGRSVSRINGQMVNLTTLKAVGHFLVDIHGQHDQEELMKPALHITMLDAFGDKEFFQTKKE
YQEYFDRYRELRKAVLEKQKNEQEHKARIEMLAFQIAEIEAVSLKSGEDLALMKERDKLLNHKQIADTLTNAYVMLDNEE
FSSLSNVRSAMNDLQSLEEYDSDYKELSGNLSEAYYVLEDVTKQLGDLLDNLDFDAGRLQEIEHRLDTINAITRKYGGTV
DDVLDYLENSSKEYNLLTGNSSSSDAMEQELKQLEKDLLASAETLQTARHQIAKALEAEIKNELCDLYMDKADFKVTFTK
GKFNRDGNEQVEFYISTNPGEGFKPLVKVASGGELSRLMLAIKSAFARKEDKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
SHGQVLAISHLPQVIAIADYQFFISKESDNETTVSRVRLLTPEERVQEIAKMLAGDNVTEAALSQARALLKVDDSL

Nucleotide


Download         Length: 1671 bp        

>NTDB_id=853268 V6U63_RS04230 WP_022496506.1 850253..851923(+) (recN) [Streptococcus salivarius strain KSS3]
ATGCTTCTCGAAATTACGATAAAGAATTTCGCAATTATTGAAGAGATTTCTCTAAACTTTGAGAATGGTATGACCGTCCT
TACTGGTGAAACAGGTGCTGGTAAGTCCATTATTATAGATGCCATGAATCTTATGTTGGGCGCACGTGCTTCTAGCGAAG
TCGTCCGTCATTCAGCATCTAAGGCTGAGATTCAGGGCTTCTTTTCAATCGAACAAAATCCTGCCTTGGTTAGTATCTTG
GAAGATAATGGGATTCCTGTTGAGGATGAATTGATTATCCGTCGTGAAATCTTCCAAAATGGTAGAAGTGTTAGTCGTAT
CAATGGACAGATGGTCAATTTAACAACGCTTAAAGCTGTTGGGCACTTCTTGGTAGATATTCATGGACAGCATGATCAGG
AAGAGCTTATGAAACCTGCTCTGCATATTACCATGCTTGATGCCTTTGGTGACAAGGAATTTTTCCAAACTAAGAAAGAA
TATCAAGAGTATTTTGACCGCTATCGTGAGTTAAGAAAAGCTGTTCTTGAAAAGCAGAAAAATGAGCAGGAGCATAAGGC
TCGAATTGAAATGCTAGCTTTTCAGATTGCAGAAATTGAAGCAGTCTCTCTAAAATCAGGAGAAGATTTGGCATTGATGA
AGGAGCGAGACAAGCTTCTTAACCATAAGCAGATTGCGGATACCTTAACCAATGCCTATGTCATGTTGGATAACGAAGAA
TTTTCAAGCCTTTCAAATGTCCGTTCGGCCATGAATGATCTCCAGTCTCTTGAAGAATATGACTCTGATTACAAAGAACT
TTCTGGAAATCTATCAGAAGCCTATTATGTTTTAGAAGATGTCACTAAGCAACTAGGTGACCTTTTGGATAATTTGGACT
TTGATGCTGGGCGTTTGCAAGAGATTGAACACCGCTTAGATACGATTAATGCAATTACTCGTAAATATGGTGGAACTGTT
GATGACGTCTTGGATTATCTGGAAAATTCAAGTAAAGAGTACAATCTTCTGACTGGCAATTCCAGTTCGTCAGATGCCAT
GGAACAAGAGCTTAAGCAACTTGAAAAAGATCTGCTAGCGTCTGCAGAGACACTACAAACGGCACGCCATCAAATAGCTA
AGGCTCTTGAAGCTGAAATTAAGAACGAGTTATGCGACCTTTACATGGATAAGGCTGATTTTAAAGTTACCTTTACTAAA
GGGAAATTTAACCGTGATGGCAATGAGCAGGTTGAGTTTTACATCTCAACCAATCCAGGTGAAGGCTTTAAACCGCTTGT
TAAGGTTGCTTCAGGAGGAGAATTATCTCGACTCATGTTAGCGATTAAGTCAGCCTTTGCCCGCAAAGAAGACAAAACAA
GTATTGTCTTTGATGAGGTTGATACTGGCGTTTCAGGTCGTGTTGCCCAAGCCATCGCTCAGAAAATTCATAAGATTGGG
AGTCATGGTCAGGTCTTGGCCATCAGTCACCTTCCACAAGTTATTGCCATTGCTGATTATCAGTTCTTTATTTCTAAGGA
AAGCGATAATGAGACGACTGTCTCTCGTGTTCGTCTCTTGACACCTGAGGAAAGGGTGCAAGAAATTGCTAAGATGTTAG
CAGGTGATAATGTGACAGAGGCTGCCTTGAGCCAAGCAAGAGCCTTGTTAAAGGTGGATGACTCTCTTTAG

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

44.154

100

0.455