Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   V6U63_RS04175 Genome accession   NZ_CP145861
Coordinates   840141..842342 (+) Length   733 a.a.
NCBI ID   WP_410535487.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 835141..847342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U63_RS04150 (V6U63_04150) hflX 835615..836853 (+) 1239 WP_049546004.1 GTPase HflX -
  V6U63_RS04155 (V6U63_04155) - 836846..837487 (+) 642 WP_021144310.1 hypothetical protein -
  V6U63_RS04160 (V6U63_04160) rnz 837519..838448 (+) 930 WP_049546005.1 ribonuclease Z -
  V6U63_RS04165 (V6U63_04165) - 838448..839215 (+) 768 WP_195519925.1 SDR family NAD(P)-dependent oxidoreductase -
  V6U63_RS04170 (V6U63_04170) - 839426..839830 (+) 405 WP_247915479.1 GNAT family N-acetyltransferase -
  V6U63_RS04175 (V6U63_04175) recJ 840141..842342 (+) 2202 WP_410535487.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  V6U63_RS04180 (V6U63_04180) - 842460..842978 (+) 519 WP_002884049.1 adenine phosphoribosyltransferase -
  V6U63_RS04185 (V6U63_04185) metA 843151..844095 (+) 945 WP_022496512.1 homoserine O-succinyltransferase -
  V6U63_RS04190 (V6U63_04190) - 844168..844866 (+) 699 WP_014634316.1 DnaD domain-containing protein -
  V6U63_RS04195 (V6U63_04195) nth 844866..845510 (+) 645 WP_247916048.1 endonuclease III -
  V6U63_RS04200 (V6U63_04200) - 845638..846399 (+) 762 WP_022496510.1 hypothetical protein -

Sequence

Protein


Download         Length: 733 a.a.        Molecular weight: 82188.32 Da        Isoelectric Point: 4.3248

>NTDB_id=853267 V6U63_RS04175 WP_410535487.1 840141..842342(+) (recJ) [Streptococcus salivarius strain KSS3]
MITSTYDWKINTKEPDAGFFKLAKEHGLAETAAKIAYERGVTTEEALEDFLKADLSHLHDPYLLHDMDKAVARIRQAIEN
YEQILVYGDYDADGMTSASIVKEALEMMGAEARVYLPNRFTDGYGPNESVYKYFIEQEGISLIVTVDNGVAGNEAIAYAQ
EQGVDVIVTDHHSMPSQLPDAYAIVHPEHPDADYPFKYLAGCGVAFKLATALLETIPTEMLDLVAIGTIADMVSLTDENR
IMVKVGLEILKTTERIGLQELLRISDVDPTTISEETVGFKLAPQLNALGRLDDPNPAIELLTGFDDEEAQAIALEINAKN
EERKEVVQKIFDEAMTMVDLDKPVQVLAKEGWHPGVLGIVAGRIMEQISQTVVVLNIEDGLAKGSARSLESINIFHALDD
HRDIFTAFGGHAGAAGMTLPEENLGQLSDILCNYVYDNDIDTSAKNTLNLDEELQLSELSLDTIKSLEKLAPFGMDNKKP
VFWLHDITVTQARTMGQNGAHLKFKVKQGKDSFDVVAFNKGHLLQEFQQAQGLELAVTLSVNVWNGQTTLQIMLEDARVD
GVQLFDFRSKNMALPEGVPTVEEAADTEPAVVLNTLPESATELKEWFEGKDFQAIYFKNSIKEAYYLTGYGTREQFARLY
KTIYQFPEFDVRYKLDELSHYLKIDKILLIKMIQIFDELDFVTIDNGVMTVNKEAEKREIEDSQIFQNLKRLVKFQELMA
LGTPQEIYDWLYK

Nucleotide


Download         Length: 2202 bp        

>NTDB_id=853267 V6U63_RS04175 WP_410535487.1 840141..842342(+) (recJ) [Streptococcus salivarius strain KSS3]
ATGATTACATCAACGTATGATTGGAAAATAAACACAAAAGAGCCAGATGCTGGCTTTTTTAAACTTGCCAAAGAACATGG
GCTGGCAGAAACAGCAGCCAAGATTGCTTATGAACGTGGCGTGACGACAGAAGAGGCTCTTGAAGACTTTCTTAAGGCTG
ATCTATCACACCTTCATGATCCTTATCTTCTTCATGATATGGACAAGGCAGTGGCTAGAATTCGTCAGGCCATTGAAAAT
TACGAGCAAATCTTAGTCTATGGAGATTATGATGCGGATGGGATGACGTCAGCATCGATTGTCAAGGAAGCTCTTGAAAT
GATGGGCGCTGAAGCTCGAGTCTATTTGCCTAACCGTTTCACAGATGGTTATGGACCAAACGAAAGTGTCTACAAGTATT
TCATTGAGCAGGAAGGCATTTCACTCATTGTTACAGTGGATAATGGGGTAGCGGGTAATGAGGCTATTGCGTATGCGCAA
GAGCAAGGTGTGGACGTTATCGTTACAGATCATCATAGCATGCCATCACAGCTTCCAGATGCCTACGCCATTGTCCATCC
AGAGCATCCAGATGCCGATTATCCTTTTAAGTATTTGGCAGGATGTGGTGTAGCTTTCAAATTAGCAACTGCCCTCCTTG
AAACTATTCCTACAGAGATGTTGGACTTGGTAGCCATTGGTACCATTGCCGATATGGTTAGCCTTACGGATGAAAATCGT
ATTATGGTCAAGGTCGGGCTGGAAATTCTCAAGACTACTGAGCGTATAGGGCTTCAAGAATTGCTCCGCATTTCAGATGT
GGACCCAACAACGATTTCCGAAGAAACGGTAGGTTTCAAACTGGCTCCTCAACTCAATGCCTTGGGACGCTTAGATGATC
CAAATCCAGCCATTGAATTGCTGACCGGATTTGACGATGAGGAAGCTCAAGCCATTGCTTTGGAAATCAATGCTAAAAAT
GAAGAACGTAAGGAAGTTGTTCAAAAAATCTTTGATGAAGCTATGACCATGGTAGACTTGGACAAACCAGTTCAGGTTTT
GGCCAAGGAAGGTTGGCATCCTGGCGTTCTAGGTATTGTGGCTGGGCGCATCATGGAACAAATCAGCCAGACAGTAGTGG
TTTTGAATATTGAAGATGGCTTGGCTAAGGGTTCGGCCCGTAGTTTGGAATCTATCAATATCTTCCATGCCCTTGATGAC
CACCGAGATATCTTTACTGCATTTGGAGGACATGCTGGAGCGGCTGGGATGACTCTTCCGGAGGAAAATCTTGGTCAACT
CTCAGATATTTTGTGCAATTATGTCTATGACAATGACATTGATACAAGTGCCAAAAATACGCTTAATTTAGACGAGGAGC
TCCAACTCAGTGAGCTTAGCTTGGATACCATTAAGAGCCTTGAAAAACTAGCACCTTTTGGTATGGATAATAAAAAGCCA
GTCTTTTGGCTACATGATATTACCGTTACTCAAGCTAGGACAATGGGACAAAATGGGGCCCATCTTAAGTTTAAGGTTAA
ACAAGGCAAGGATAGCTTTGACGTTGTCGCTTTTAATAAAGGTCATTTGCTTCAAGAATTTCAACAAGCTCAAGGTTTGG
AATTGGCAGTGACCTTGTCTGTTAATGTTTGGAATGGTCAGACAACGCTACAGATCATGCTAGAAGATGCGCGTGTAGAT
GGTGTTCAATTATTTGATTTTCGCTCAAAAAATATGGCACTGCCTGAAGGCGTACCAACGGTAGAAGAAGCAGCAGACAC
AGAGCCTGCGGTTGTCCTCAACACCCTACCTGAATCAGCGACAGAATTAAAAGAGTGGTTTGAAGGTAAAGATTTCCAGG
CTATCTATTTTAAAAATAGCATTAAGGAAGCCTATTATCTGACAGGTTATGGAACAAGAGAGCAATTTGCAAGGCTCTAT
AAAACCATTTACCAATTCCCAGAGTTCGATGTCCGTTATAAATTGGATGAACTCAGTCATTACCTTAAAATCGACAAGAT
TCTCCTGATTAAGATGATTCAAATCTTTGATGAATTGGATTTTGTGACTATTGATAATGGTGTTATGACAGTCAATAAAG
AAGCTGAAAAACGTGAGATTGAGGACAGTCAGATTTTCCAAAATCTGAAACGACTCGTTAAGTTCCAAGAACTCATGGCT
CTGGGAACACCACAGGAAATTTATGATTGGCTGTATAAGTAG

Domains

Predicted by InterProScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(583-731)

RecJ OB domain (RecJ_OB)

(451-556)

DHH family (DHH)

(83-228)

DHHA1 domain (DHHA1)

(317-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

68.207

100

0.685
  recJ Bacillus subtilis subsp. subtilis str. 168

37.806

100

0.4