Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   V6U63_RS00195 Genome accession   NZ_CP145861
Coordinates   24728..25501 (+) Length   257 a.a.
NCBI ID   WP_410535116.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 19728..30501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U63_RS00175 (V6U63_00175) mreD 20201..20725 (+) 525 WP_037599472.1 rod shape-determining protein MreD -
  V6U63_RS00180 (V6U63_00180) - 20810..22297 (+) 1488 WP_410535112.1 CHAP domain-containing protein -
  V6U63_RS00185 (V6U63_00185) - 22509..23474 (+) 966 WP_410535114.1 ribose-phosphate diphosphokinase -
  V6U63_RS00190 (V6U63_00190) - 23566..24741 (+) 1176 WP_073685338.1 pyridoxal phosphate-dependent aminotransferase -
  V6U63_RS00195 (V6U63_00195) recO 24728..25501 (+) 774 WP_410535116.1 DNA repair protein RecO Machinery gene
  V6U63_RS00200 (V6U63_00200) plsX 25713..26717 (+) 1005 WP_013989885.1 phosphate acyltransferase PlsX -
  V6U63_RS00205 (V6U63_00205) - 26717..26962 (+) 246 WP_022495816.1 phosphopantetheine-binding protein -
  V6U63_RS00210 (V6U63_00210) purC 27221..27928 (+) 708 WP_002886293.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29676.83 Da        Isoelectric Point: 5.2062

>NTDB_id=853225 V6U63_RS00195 WP_410535116.1 24728..25501(+) (recO) [Streptococcus salivarius strain KSS3]
MQKLESRGLVLFNRNYRENDKLVKIFTEQAGKRMFFVRGGGAGKLSAVIQPLTIAEFMMTVNDEGLSFIEDYSQAQSFKE
ITSDIFKLSYATYLAALTDAAIADGVADAQLFAFLEKTLELMEEGLDYEILTNIFEIQVLDRFGVRLNFHECVFCHRVGL
PFDFSYKFSGLLCPNHYAEDERRSHLNPNVPYLLDRFQGLSFEELRSISVKDDMKRKLRHFIDDLYDNYVGIHLKSKKFI
DNLNSWGHIMNKEDSAD

Nucleotide


Download         Length: 774 bp        

>NTDB_id=853225 V6U63_RS00195 WP_410535116.1 24728..25501(+) (recO) [Streptococcus salivarius strain KSS3]
ATGCAGAAGCTTGAGAGTAGAGGGCTTGTCCTCTTCAATCGTAATTATCGTGAGAATGATAAACTAGTTAAAATTTTTAC
CGAGCAAGCTGGTAAACGGATGTTTTTTGTTAGAGGTGGTGGGGCAGGTAAATTAAGTGCTGTCATTCAACCTTTGACCA
TCGCTGAATTCATGATGACTGTAAATGATGAAGGTCTATCTTTCATAGAAGATTATAGCCAGGCACAATCCTTCAAGGAA
ATTACAAGCGATATTTTCAAGCTGTCTTATGCGACTTATTTAGCTGCTCTGACGGATGCTGCTATTGCTGACGGTGTAGC
AGATGCACAATTATTTGCATTCTTGGAGAAGACGCTTGAATTAATGGAAGAAGGCTTGGATTATGAAATCTTGACTAATA
TCTTTGAGATTCAGGTTTTAGACCGTTTCGGTGTTCGCTTGAATTTTCACGAGTGTGTCTTTTGCCATCGTGTGGGCCTT
CCTTTTGATTTTTCGTATAAGTTCTCGGGGCTACTTTGTCCAAATCATTATGCAGAGGATGAAAGGCGTAGTCACTTAAA
TCCTAATGTACCTTATCTTTTAGATCGTTTTCAGGGGCTTTCTTTTGAGGAATTGAGAAGCATATCTGTTAAGGATGACA
TGAAACGAAAGCTACGACATTTTATTGATGACCTCTATGATAATTATGTTGGAATACATCTTAAAAGTAAGAAGTTTATT
GATAATCTAAATTCTTGGGGTCATATTATGAATAAAGAAGATAGTGCTGACTAG

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(83-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

63.241

98.444

0.623