Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   V6U62_RS07410 Genome accession   NZ_CP145860
Coordinates   1622122..1623858 (-) Length   578 a.a.
NCBI ID   WP_021144542.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1617122..1628858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U62_RS07390 (V6U62_07370) - 1617155..1618138 (-) 984 WP_195914462.1 rhodanese-related sulfurtransferase -
  V6U62_RS07395 (V6U62_07375) - 1618328..1619029 (-) 702 WP_195914461.1 glucosamine-6-phosphate deaminase -
  V6U62_RS07400 (V6U62_07380) queA 1619181..1620224 (+) 1044 WP_195914460.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  V6U62_RS07405 (V6U62_07385) rcrQ 1620322..1622109 (-) 1788 WP_195914459.1 ABC transporter ATP-binding protein Regulator
  V6U62_RS07410 (V6U62_07390) rcrP 1622122..1623858 (-) 1737 WP_021144542.1 ABC transporter ATP-binding protein Regulator
  V6U62_RS07415 (V6U62_07395) - 1624338..1625531 (-) 1194 WP_195188019.1 tyrosine-type recombinase/integrase -
  V6U62_RS07420 (V6U62_07400) - 1625549..1625773 (-) 225 WP_195188018.1 DUF3173 family protein -
  V6U62_RS07425 (V6U62_07405) - 1625874..1626890 (-) 1017 WP_229036680.1 replication protein RepA -
  V6U62_RS07430 (V6U62_07410) - 1627521..1628252 (-) 732 WP_195188016.1 hypothetical protein -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 64799.73 Da        Isoelectric Point: 5.5882

>NTDB_id=853192 V6U62_RS07410 WP_021144542.1 1622122..1623858(-) (rcrP) [Streptococcus salivarius strain KSS2]
MAYIWSYLRRYPKWLAMNFTAAILFVIANLGLPTVLARMIDEGINRGDVDKLYAYAWVMFGVVLTGIVGRILLSYAVGKL
TTTMVQVMRNDIYAKLQEYSHHEYEQIGVSSLVTRITSDAFVLMQFADQVLKLGVITPLMMVSSVFLILTTSPSLAWIVA
ISLPFLAVVVWYVAVKTRPLSEKQQATLDKINQYARENLTGLRVIRAFAREDFQEKKFASENAVYADNSNKLFKLTGLTE
PLFVQIIIAMIVAIVWFALEPLGSGTLAIGDLVAFIEYSFHALLSFLFLANLFTMYPRTAVSSERLQEIMDMPISINPNE
DGVTETETKGYLEFDNVTFAYPGETESPVLHNISFKAKPGETIAFIGSTGSGKSSLVQLIPRFYDVTLGRILVDGVDVRD
YNLKALRRKIGFIPQKALLFTGTIGENIRYGKENASHEELNQATDVAQAKEFIDSKEERYDSHLAEGGSNLSGGQKQRLS
IARAVVKRPDLYIFDDSFSALDYKTDATLRRRLKEVTQDATVLIVAQRVGTIMDADQIIVLDKGEIVGRGRHEELMESNE
IYREIANSQLNQKSLTED

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=853192 V6U62_RS07410 WP_021144542.1 1622122..1623858(-) (rcrP) [Streptococcus salivarius strain KSS2]
ATGGCTTATATTTGGTCTTATCTCAGACGTTATCCTAAGTGGCTAGCAATGAATTTTACGGCAGCCATTTTATTTGTTAT
TGCTAACTTGGGTTTGCCGACGGTTCTTGCCAGAATGATTGATGAGGGAATAAACCGTGGTGATGTTGATAAGCTTTACG
CTTATGCTTGGGTCATGTTTGGTGTAGTTTTGACTGGGATTGTTGGTCGTATACTTCTGTCCTATGCAGTTGGTAAGTTG
ACCACTACTATGGTGCAAGTCATGCGTAATGACATTTATGCTAAGCTTCAGGAGTATTCCCACCACGAGTATGAGCAGAT
TGGGGTATCCTCTTTGGTGACTCGTATTACATCAGATGCTTTTGTGCTTATGCAGTTTGCGGATCAGGTTCTTAAGCTAG
GGGTTATCACTCCTTTGATGATGGTTTCCAGTGTCTTTTTGATTTTGACGACAAGTCCATCTTTGGCTTGGATTGTGGCA
ATCTCCTTGCCTTTCCTAGCCGTAGTAGTATGGTATGTGGCGGTAAAAACGCGTCCGCTTTCTGAAAAACAACAGGCAAC
TCTCGACAAGATTAACCAGTATGCTCGTGAAAATCTGACTGGACTTCGTGTCATCCGTGCTTTTGCTAGAGAAGATTTTC
AAGAGAAGAAGTTTGCTTCTGAAAATGCTGTCTATGCGGATAATTCAAACAAGCTCTTTAAATTAACTGGTTTGACTGAG
CCACTTTTTGTGCAAATCATCATCGCCATGATTGTGGCAATTGTTTGGTTTGCTCTTGAGCCATTAGGTTCTGGGACGTT
GGCAATCGGGGATTTGGTTGCCTTTATTGAGTACAGTTTCCATGCGCTATTGTCTTTCCTTTTCCTAGCCAACCTCTTTA
CCATGTATCCTCGTACGGCGGTATCTAGTGAACGTCTGCAGGAAATTATGGACATGCCTATTTCTATCAATCCAAATGAA
GATGGGGTGACAGAGACTGAGACTAAGGGATATTTGGAGTTTGACAATGTAACCTTTGCCTATCCTGGTGAAACTGAGAG
TCCTGTCCTACACAATATATCTTTCAAGGCTAAACCCGGTGAAACCATTGCCTTTATTGGATCTACGGGTTCAGGAAAAT
CATCACTTGTGCAGTTGATTCCACGCTTTTATGATGTAACACTTGGACGCATTCTTGTTGATGGTGTGGATGTTCGTGAC
TATAATCTTAAGGCTCTTCGTCGTAAGATTGGCTTTATTCCACAAAAAGCCCTGCTCTTTACAGGAACCATCGGTGAAAA
TATCCGTTATGGTAAGGAAAATGCCAGTCATGAAGAATTGAATCAAGCTACGGATGTCGCTCAAGCTAAGGAATTTATTG
ACAGTAAGGAAGAACGCTACGATTCTCACTTGGCTGAGGGTGGTAGCAACCTTTCTGGGGGACAGAAGCAGCGTTTGTCA
ATTGCACGTGCTGTGGTTAAACGTCCTGATCTTTACATCTTTGATGATTCCTTCTCTGCCTTGGACTACAAGACTGATGC
GACCTTGCGCCGTCGTCTGAAAGAAGTGACCCAGGATGCGACAGTCTTGATTGTGGCTCAACGTGTGGGGACTATCATGG
ATGCAGACCAGATTATCGTTCTTGATAAGGGTGAAATCGTGGGTCGTGGCCGTCACGAAGAGCTTATGGAAAGCAATGAG
ATTTACCGTGAAATTGCTAATTCACAATTGAATCAAAAGAGTCTTACGGAAGACTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(17-279)

ABC transporter (ABC_tran)

(350-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.474

92.042

0.363