Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   V6U62_RS05885 Genome accession   NZ_CP145860
Coordinates   1306044..1308245 (-) Length   733 a.a.
NCBI ID   WP_410535487.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1301044..1313245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U62_RS05860 (V6U62_05845) - 1301987..1302748 (-) 762 WP_022496510.1 hypothetical protein -
  V6U62_RS05865 (V6U62_05850) nth 1302876..1303520 (-) 645 WP_247916048.1 endonuclease III -
  V6U62_RS05870 (V6U62_05855) - 1303520..1304218 (-) 699 WP_014634316.1 DnaD domain-containing protein -
  V6U62_RS05875 (V6U62_05860) metA 1304291..1305235 (-) 945 WP_022496512.1 homoserine O-succinyltransferase -
  V6U62_RS05880 (V6U62_05865) - 1305408..1305926 (-) 519 WP_002884049.1 adenine phosphoribosyltransferase -
  V6U62_RS05885 (V6U62_05870) recJ 1306044..1308245 (-) 2202 WP_410535487.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  V6U62_RS05890 (V6U62_05875) - 1308556..1308960 (-) 405 WP_247915479.1 GNAT family N-acetyltransferase -
  V6U62_RS05895 (V6U62_05880) - 1309171..1309938 (-) 768 WP_195519925.1 SDR family NAD(P)-dependent oxidoreductase -
  V6U62_RS05900 (V6U62_05885) rnz 1309938..1310867 (-) 930 WP_049546005.1 ribonuclease Z -
  V6U62_RS05905 (V6U62_05890) - 1310899..1311540 (-) 642 WP_021144310.1 hypothetical protein -
  V6U62_RS05910 (V6U62_05895) hflX 1311533..1312771 (-) 1239 WP_049546004.1 GTPase HflX -

Sequence

Protein


Download         Length: 733 a.a.        Molecular weight: 82188.32 Da        Isoelectric Point: 4.3248

>NTDB_id=853182 V6U62_RS05885 WP_410535487.1 1306044..1308245(-) (recJ) [Streptococcus salivarius strain KSS2]
MITSTYDWKINTKEPDAGFFKLAKEHGLAETAAKIAYERGVTTEEALEDFLKADLSHLHDPYLLHDMDKAVARIRQAIEN
YEQILVYGDYDADGMTSASIVKEALEMMGAEARVYLPNRFTDGYGPNESVYKYFIEQEGISLIVTVDNGVAGNEAIAYAQ
EQGVDVIVTDHHSMPSQLPDAYAIVHPEHPDADYPFKYLAGCGVAFKLATALLETIPTEMLDLVAIGTIADMVSLTDENR
IMVKVGLEILKTTERIGLQELLRISDVDPTTISEETVGFKLAPQLNALGRLDDPNPAIELLTGFDDEEAQAIALEINAKN
EERKEVVQKIFDEAMTMVDLDKPVQVLAKEGWHPGVLGIVAGRIMEQISQTVVVLNIEDGLAKGSARSLESINIFHALDD
HRDIFTAFGGHAGAAGMTLPEENLGQLSDILCNYVYDNDIDTSAKNTLNLDEELQLSELSLDTIKSLEKLAPFGMDNKKP
VFWLHDITVTQARTMGQNGAHLKFKVKQGKDSFDVVAFNKGHLLQEFQQAQGLELAVTLSVNVWNGQTTLQIMLEDARVD
GVQLFDFRSKNMALPEGVPTVEEAADTEPAVVLNTLPESATELKEWFEGKDFQAIYFKNSIKEAYYLTGYGTREQFARLY
KTIYQFPEFDVRYKLDELSHYLKIDKILLIKMIQIFDELDFVTIDNGVMTVNKEAEKREIEDSQIFQNLKRLVKFQELMA
LGTPQEIYDWLYK

Nucleotide


Download         Length: 2202 bp        

>NTDB_id=853182 V6U62_RS05885 WP_410535487.1 1306044..1308245(-) (recJ) [Streptococcus salivarius strain KSS2]
ATGATTACATCAACGTATGATTGGAAAATAAACACAAAAGAGCCAGATGCTGGCTTTTTTAAACTTGCCAAAGAACATGG
GCTGGCAGAAACAGCAGCCAAGATTGCTTATGAACGTGGCGTGACGACAGAAGAGGCTCTTGAAGACTTTCTTAAGGCTG
ATCTATCACACCTTCATGATCCTTATCTTCTTCATGATATGGACAAGGCAGTGGCTAGAATTCGTCAGGCCATTGAAAAT
TACGAGCAAATCTTAGTCTATGGAGATTATGATGCGGATGGGATGACGTCAGCATCGATTGTCAAGGAAGCTCTTGAAAT
GATGGGCGCTGAAGCTCGAGTCTATTTGCCTAACCGTTTCACAGATGGTTATGGACCAAACGAAAGTGTCTACAAGTATT
TCATTGAGCAGGAAGGCATTTCACTCATTGTTACAGTGGATAATGGGGTAGCGGGTAATGAGGCTATTGCGTATGCGCAA
GAGCAAGGTGTGGACGTTATCGTTACAGATCATCATAGCATGCCATCACAGCTTCCAGATGCCTACGCCATTGTCCATCC
AGAGCATCCAGATGCCGATTATCCTTTTAAGTATTTGGCAGGATGTGGTGTAGCTTTCAAATTAGCAACTGCCCTCCTTG
AAACTATTCCTACAGAGATGTTGGACTTGGTAGCCATTGGTACCATTGCCGATATGGTTAGCCTTACGGATGAAAATCGT
ATTATGGTCAAGGTCGGGCTGGAAATTCTCAAGACTACTGAGCGTATAGGGCTTCAAGAATTGCTCCGCATTTCAGATGT
GGACCCAACAACGATTTCCGAAGAAACGGTAGGTTTCAAACTGGCTCCTCAACTCAATGCCTTGGGACGCTTAGATGATC
CAAATCCAGCCATTGAATTGCTGACCGGATTTGACGATGAGGAAGCTCAAGCCATTGCTTTGGAAATCAATGCTAAAAAT
GAAGAACGTAAGGAAGTTGTTCAAAAAATCTTTGATGAAGCTATGACCATGGTAGACTTGGACAAACCAGTTCAGGTTTT
GGCCAAGGAAGGTTGGCATCCTGGCGTTCTAGGTATTGTGGCTGGGCGCATCATGGAACAAATCAGCCAGACAGTAGTGG
TTTTGAATATTGAAGATGGCTTGGCTAAGGGTTCGGCCCGTAGTTTGGAATCTATCAATATCTTCCATGCCCTTGATGAC
CACCGAGATATCTTTACTGCATTTGGAGGACATGCTGGAGCGGCTGGGATGACTCTTCCGGAGGAAAATCTTGGTCAACT
CTCAGATATTTTGTGCAATTATGTCTATGACAATGACATTGATACAAGTGCCAAAAATACGCTTAATTTAGACGAGGAGC
TCCAACTCAGTGAGCTTAGCTTGGATACCATTAAGAGCCTTGAAAAACTAGCACCTTTTGGTATGGATAATAAAAAGCCA
GTCTTTTGGCTACATGATATTACCGTTACTCAAGCTAGGACAATGGGACAAAATGGGGCCCATCTTAAGTTTAAGGTTAA
ACAAGGCAAGGATAGCTTTGACGTTGTCGCTTTTAATAAAGGTCATTTGCTTCAAGAATTTCAACAAGCTCAAGGTTTGG
AATTGGCAGTGACCTTGTCTGTTAATGTTTGGAATGGTCAGACAACGCTACAGATCATGCTAGAAGATGCGCGTGTAGAT
GGTGTTCAATTATTTGATTTTCGCTCAAAAAATATGGCACTGCCTGAAGGCGTACCAACGGTAGAAGAAGCAGCAGACAC
AGAGCCTGCGGTTGTCCTCAACACCCTACCTGAATCAGCGACAGAATTAAAAGAGTGGTTTGAAGGTAAAGATTTCCAGG
CTATCTATTTTAAAAATAGCATTAAGGAAGCCTATTATCTGACAGGTTATGGAACAAGAGAGCAATTTGCAAGGCTCTAT
AAAACCATTTACCAATTCCCAGAGTTCGATGTCCGTTATAAATTGGATGAACTCAGTCATTACCTTAAAATCGACAAGAT
TCTCCTGATTAAGATGATTCAAATCTTTGATGAATTGGATTTTGTGACTATTGATAATGGTGTTATGACAGTCAATAAAG
AAGCTGAAAAACGTGAGATTGAGGACAGTCAGATTTTCCAAAATCTGAAACGACTCGTTAAGTTCCAAGAACTCATGGCT
CTGGGAACACCACAGGAAATTTATGATTGGCTGTATAAGTAG

Domains

Predicted by InterProScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(583-731)

RecJ OB domain (RecJ_OB)

(451-556)

DHH family (DHH)

(83-228)

DHHA1 domain (DHHA1)

(317-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

68.207

100

0.685
  recJ Bacillus subtilis subsp. subtilis str. 168

37.806

100

0.4