Detailed information NTG0853160

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QYQ96_RS11195
• Genome accession: NZ_CP129421
• Coordinates: 2466867..2467877 (-)
• Length: 336 a.a.
• NCBI ID: WP_055029829.1
• Uniprot ID: A0A0Q0W5U6
• Organism: Vibrio metoecus strain ZF102
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2461867..2472877

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QYQ96_RS11185 (QYQ96_11185)	cysM	2463044..2463931 (+)	888	WP_304572189.1	cysteine synthase CysM	-
QYQ96_RS11190 (QYQ96_11190)	mutS	2464200..2466788 (+)	2589	WP_055032040.1	DNA mismatch repair protein MutS	-
QYQ96_RS11195 (QYQ96_11195)	rpoS	2466867..2467877 (-)	1011	WP_055029829.1	RNA polymerase sigma factor RpoS	Regulator
QYQ96_RS11200 (QYQ96_11200)	nlpD	2467951..2468889 (-)	939	WP_055033967.1	murein hydrolase activator NlpD	-
QYQ96_RS11205 (QYQ96_11205)	-	2468889..2469515 (-)	627	WP_304572190.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
QYQ96_RS11210 (QYQ96_11210)	surE	2469508..2470260 (-)	753	WP_055029827.1	5'/3'-nucleotidase SurE	-
QYQ96_RS11215 (QYQ96_11215)	truD	2470262..2471347 (-)	1086	WP_304572191.1	tRNA pseudouridine(13) synthase TruD	-
QYQ96_RS11220 (QYQ96_11220)	ispF	2471377..2471853 (-)	477	WP_095457712.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QYQ96_RS11225 (QYQ96_11225)	ispD	2471850..2472548 (-)	699	WP_095459370.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QYQ96_RS11230 (QYQ96_11230)	ftsB	2472545..2472829 (-)	285	WP_055029823.1	cell division protein FtsB	-

Sequence

Protein

• Length: 336 a.a.
• Molecular weight: 38596.42 Da
• Isoelectric Point: 4.3131

>NTDB_id=853160 QYQ96_RS11195 WP_055029829.1 2466867..2467877(-) (rpoS) [Vibrio metoecus strain ZF102]
MSVSNTVTKVEEFDFEDEALEVLEADDELSSDEELVAVEGASDDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSNNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDVN

Nucleotide

• Length: 1011 bp

>NTDB_id=853160 QYQ96_RS11195 WP_055029829.1 2466867..2467877(-) (rpoS) [Vibrio metoecus strain ZF102]
ATGAGTGTCAGCAATACTGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAGCGGATGA
TGAACTCTCTAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGACGATGTTCGTGAGGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCCACCCAAATGTATCTCAGCGAGATTGGTTTTTCACCACTCCTTACCGCCGAAGAAGAAGTGCTCTAT
GCTCGCCGCGCTCTACGTGGTGACGAAGCAGCACGCAAACGCATGATTGAAAGTAACTTGCGTTTAGTGGTTAAAATTTC
ACGCCGCTACAGCAACCGTGGGTTAGCCCTGCTTGATCTGATTGAAGAAGGCAATCTCGGTTTGATTCGTGCGGTTGAGA
AATTCGATCCTGAACGTGGCTTCCGCTTCTCAACTTACGCCACATGGTGGATTCGTCAAACCATCGAACGTGCGCTGATG
AACCAAACCCGCACCATTCGTCTGCCTATCCATGTCGTCAAAGAGCTGAACATTTACCTGCGTACTGCGCGTGAATTGTC
CCAACGTCTTGACCACGAACCTACGCCAGAAGAAATTGCTCTTGAGCTAGATCGTCCCGTTGATGATGTGACCAAAATGT
TGCGACTCAACGAACGCATCAGCTCTGTGGATACACCAATTGGTGGCGATGGTGATAAAGCGTTGCTAGACATCTTGCCA
GATTCCAATAATGCGGATCCTGAGTTTTCCACTCAAGATGATGACATCCGTGAATCGCTGCTCAACTGGTTAGATGAACT
CAATCCAAAACAGAAAGAAGTGCTTGCTCGTCGTTTTGGTCTGTTGGGTTATGAGCCGTCCACCTTGGAAGAAGTAGGAC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATTCAAGTGGAAGGGCTGCGTCGTCTGCGTGAGATTCTGGTCAAA
CAAGGTTTGAATATGGAAGCACTGTTTAACGTTGAATATGACGTCAATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 3 (Sigma70_r3) (175-248)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

• Sigma-70, region 4 (Sigma70_r4) (263-316)

3D structure

• AlphaFold DB: A0A0Q0W5U6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	98.503	99.405	0.979