Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   QYQ96_RS11050 Genome accession   NZ_CP129421
Coordinates   2439657..2440175 (-) Length   172 a.a.
NCBI ID   WP_055031748.1    Uniprot ID   A0A0Q0UJ75
Organism   Vibrio metoecus strain ZF102     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2434657..2445175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYQ96_RS11025 (QYQ96_11025) rimM 2434749..2435303 (-) 555 WP_304572185.1 ribosome maturation factor RimM -
  QYQ96_RS11030 (QYQ96_11030) rpsP 2435328..2435576 (-) 249 WP_000256449.1 30S ribosomal protein S16 -
  QYQ96_RS11035 (QYQ96_11035) ffh 2435812..2437200 (-) 1389 WP_055029846.1 signal recognition particle protein -
  QYQ96_RS11040 (QYQ96_11040) - 2437413..2438207 (+) 795 WP_055029845.1 inner membrane protein YpjD -
  QYQ96_RS11045 (QYQ96_11045) - 2438290..2439570 (+) 1281 WP_055043646.1 HlyC/CorC family transporter -
  QYQ96_RS11050 (QYQ96_11050) luxS 2439657..2440175 (-) 519 WP_055031748.1 S-ribosylhomocysteine lyase Regulator
  QYQ96_RS11055 (QYQ96_11055) gshA 2440228..2441802 (-) 1575 WP_055064079.1 glutamate--cysteine ligase -
  QYQ96_RS11060 (QYQ96_11060) - 2441914..2444769 (-) 2856 WP_304572186.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18931.78 Da        Isoelectric Point: 5.5455

>NTDB_id=853157 QYQ96_RS11050 WP_055031748.1 2439657..2440175(-) (luxS) [Vibrio metoecus strain ZF102]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTVPNKDILSERGIHTLEHLYAGFMRAHLNGGQVEIIDISP
MGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLKVESQDKIPELNEYQCGTAAMHSLEEAKGIAQKVIAAGISVNRNDELA
LPDAMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=853157 QYQ96_RS11050 WP_055031748.1 2439657..2440175(-) (luxS) [Vibrio metoecus strain ZF102]
ATGCCATTACTAGACAGTTTTACGGTTGATCACACTCGGATGAATGCCCCGGCTGTGCGTGTTGCGAAAACCATGCAAAC
CCCAAAAGGGGATACGATTACCGTATTTGATTTGCGCTTTACTGTGCCAAACAAAGACATTCTGTCTGAGCGCGGTATTC
ATACCTTAGAGCATTTGTACGCGGGTTTTATGCGTGCTCATCTCAATGGTGGCCAAGTGGAAATCATTGATATCTCTCCG
ATGGGGTGTCGTACCGGTTTCTACATGAGCCTGATTGGGGCACCAACAGAGCAGCAAGTCGCGCAGGCTTGGCTAGCCGC
GATGCAAGATGTGTTAAAAGTGGAAAGCCAAGATAAAATTCCTGAGCTCAACGAATACCAATGCGGCACAGCCGCAATGC
ATTCGCTAGAAGAAGCCAAAGGCATTGCGCAGAAAGTGATTGCGGCGGGTATCTCGGTAAATCGCAACGATGAGCTGGCG
CTGCCTGACGCTATGCTTAATGAACTCAAGGTTCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q0UJ75

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

94.186

100

0.942