Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   QYQ96_RS07760 Genome accession   NZ_CP129421
Coordinates   1706693..1708117 (+) Length   474 a.a.
NCBI ID   WP_304571971.1    Uniprot ID   -
Organism   Vibrio metoecus strain ZF102     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1701693..1713117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYQ96_RS07740 (QYQ96_07740) - 1702185..1702970 (-) 786 WP_000718967.1 adenosylcobinamide-GDP ribazoletransferase -
  QYQ96_RS07745 (QYQ96_07745) cobT 1702970..1703995 (-) 1026 WP_055030746.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  QYQ96_RS07750 (QYQ96_07750) msrB 1704428..1704874 (-) 447 WP_304571969.1 peptide-methionine (R)-S-oxide reductase MsrB -
  QYQ96_RS07755 (QYQ96_07755) - 1705172..1706545 (+) 1374 WP_304571970.1 L-cystine transporter -
  QYQ96_RS07760 (QYQ96_07760) sbcB 1706693..1708117 (+) 1425 WP_304571971.1 exodeoxyribonuclease I Machinery gene
  QYQ96_RS07765 (QYQ96_07765) - 1708149..1708523 (+) 375 WP_032469900.1 CidA/LrgA family protein -
  QYQ96_RS07770 (QYQ96_07770) - 1708514..1709191 (+) 678 WP_000270058.1 LrgB family protein -
  QYQ96_RS07775 (QYQ96_07775) cdd 1709357..1710244 (+) 888 WP_304571972.1 cytidine deaminase -
  QYQ96_RS07780 (QYQ96_07780) - 1710404..1711279 (+) 876 WP_304571973.1 AEC family transporter -
  QYQ96_RS07785 (QYQ96_07785) purT 1711431..1712606 (+) 1176 WP_304571974.1 phosphoribosylglycinamide formyltransferase 2 -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54651.05 Da        Isoelectric Point: 6.0802

>NTDB_id=853149 QYQ96_RS07760 WP_304571971.1 1706693..1708117(+) (sbcB) [Vibrio metoecus strain ZF102]
MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGITPQKANSHGLSEP
EFIARIHAEFSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQHGNSRWDLLDVIRACHALRPEGMEWPENEDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIELAKKLKAAQPKLFDYFFNMRHKRKLTELIDIVNQTPLMHVSGMLGRERQY
TSWIVPIAWHPTNQNAVIVVDLGKAPQPLLDLDAEALQARLYTRYEDLAPDELPIPVKLVHLNKCPILAPAKTLTAENAE
KIGIDREQCLAHLNVIRQHPEIREKLVSVFSQEREFAKENNVDSQLYDGFFSPADRAAMDIIRTTAPENLGNLDIKVADK
RIEPLLFRYRARHYPHTLTDAEQRRWAAHCREYFERNLESYMLNLENLVHEHQADPKKMAILKSVYHYVEKLAC

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=853149 QYQ96_RS07760 WP_304571971.1 1706693..1708117(+) (sbcB) [Vibrio metoecus strain ZF102]
ATGCAGCAAGAACACCAGCCCACTTTTTTCTTTTTCGACTACGAGACTTGGGGAGTCAATCCCGCCAAGGATCGTCCAAG
TCAGTTTGCGGGTGTTCGTACCGATATGGATTTCAACATTATTGGTGAGCCGCTGGTCATTTACTGCCAATTACCCAATG
ATTATTTACCTGCGCCTGAAGCGGCACTGATTACCGGCATTACTCCACAAAAGGCGAATAGCCACGGCTTGTCAGAGCCA
GAATTCATCGCCCGAATCCACGCAGAGTTTTCCACGCCGAATACCACCAGCCTAGGCTACAACAGCATTCGTTTTGATGA
TGAAGTGACGCGCTACACCTGTTATCGCAACTTTATCGACCCGTATGCATGGAGCTGGCAACACGGCAATTCACGCTGGG
ATCTACTGGATGTGATCCGCGCTTGTCATGCTCTGCGCCCTGAAGGCATGGAATGGCCAGAAAATGAAGATGGCTTTACC
AGCTTCAAACTAGAACACCTTTCTGTTGCCAACGGCATTGAACACAGCAACGCACACGATGCCATGGCCGATGTGATTGC
CACGATTGAATTGGCGAAAAAGCTCAAAGCCGCGCAGCCTAAGTTATTCGACTATTTTTTTAACATGCGCCACAAACGTA
AGCTGACTGAGCTGATTGATATCGTTAACCAAACCCCGCTGATGCATGTTTCCGGCATGCTTGGCCGTGAACGCCAGTAC
ACCAGTTGGATTGTGCCGATTGCTTGGCATCCGACCAACCAAAATGCGGTGATTGTGGTGGATTTGGGTAAAGCCCCTCA
GCCACTACTGGATCTGGATGCAGAAGCGTTGCAAGCGCGCCTCTATACACGCTATGAAGACTTAGCACCCGATGAACTGC
CGATTCCTGTGAAGTTAGTACATCTCAACAAATGCCCAATTCTGGCTCCGGCCAAAACCTTAACCGCAGAGAATGCCGAA
AAGATTGGTATTGATCGCGAGCAGTGTCTTGCGCATTTGAATGTGATTCGCCAACATCCAGAAATTCGTGAAAAGCTTGT
CTCAGTGTTCAGTCAAGAACGTGAGTTTGCCAAGGAAAACAATGTAGATAGCCAATTGTATGATGGTTTTTTCTCTCCTG
CCGATCGCGCAGCGATGGATATCATTCGAACCACTGCTCCGGAAAACCTCGGAAACCTTGACATAAAAGTGGCAGATAAA
CGGATTGAACCACTTCTCTTTCGCTACCGCGCACGCCATTATCCACATACCTTAACCGATGCCGAACAACGGCGTTGGGC
GGCTCATTGTCGTGAGTATTTCGAGCGCAATCTGGAAAGCTATATGTTGAATTTGGAAAATCTGGTGCATGAACATCAAG
CTGATCCAAAGAAAATGGCGATTTTAAAATCCGTCTACCATTACGTGGAAAAACTCGCTTGCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)

Exonuclease (RNase_T)

(11-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

93.882

100

0.939