Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   QYN05_RS06285 Genome accession   NZ_CP129406
Coordinates   745923..746558 (-) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain PA272     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 740923..751558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYN05_RS06255 murB 742021..743040 (-) 1020 WP_003091153.1 UDP-N-acetylmuramate dehydrogenase -
  QYN05_RS06260 - 743037..743501 (-) 465 WP_003091154.1 low molecular weight protein-tyrosine-phosphatase -
  QYN05_RS06265 kdsB 743501..744265 (-) 765 WP_003106922.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QYN05_RS06270 - 744265..744450 (-) 186 WP_003091157.1 Trm112 family protein -
  QYN05_RS06275 lpxK 744488..745486 (-) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  QYN05_RS06280 - 745486..745926 (-) 441 WP_003091161.1 biopolymer transporter ExbD -
  QYN05_RS06285 exbB 745923..746558 (-) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  QYN05_RS06290 comA 746631..748856 (-) 2226 WP_038820207.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QYN05_RS06295 - 748987..749520 (+) 534 WP_003091165.1 DUF2062 domain-containing protein -
  QYN05_RS06300 - 749608..750852 (-) 1245 WP_017001504.1 lipoprotein-releasing ABC transporter permease subunit -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=853075 QYN05_RS06285 WP_003091163.1 745923..746558(-) (exbB) [Pseudomonas aeruginosa strain PA272]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=853075 QYN05_RS06285 WP_003091163.1 745923..746558(-) (exbB) [Pseudomonas aeruginosa strain PA272]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGACGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81