Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   V6T26_RS05775 Genome accession   NZ_CP145858
Coordinates   1271550..1273220 (-) Length   556 a.a.
NCBI ID   WP_037601101.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1266550..1278220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6T26_RS05740 (V6T26_05740) - 1266587..1267279 (-) 693 WP_000240128.1 phosphoglycerate mutase -
  V6T26_RS05745 (V6T26_05745) - 1267535..1268470 (+) 936 WP_060971492.1 dihydroorotate oxidase -
  V6T26_RS05750 (V6T26_05750) - 1268533..1268733 (-) 201 WP_002890779.1 hypothetical protein -
  V6T26_RS05755 (V6T26_05755) - 1268793..1269068 (-) 276 WP_002884048.1 HU family DNA-binding protein -
  V6T26_RS05760 (V6T26_05760) - 1269205..1269777 (-) 573 WP_064524638.1 YpmS family protein -
  V6T26_RS05765 (V6T26_05765) - 1269770..1270645 (-) 876 WP_149561287.1 SGNH/GDSL hydrolase family protein -
  V6T26_RS05770 (V6T26_05770) - 1270638..1271480 (-) 843 WP_410541062.1 DegV family protein -
  V6T26_RS05775 (V6T26_05775) recN 1271550..1273220 (-) 1671 WP_037601101.1 DNA repair protein RecN Machinery gene
  V6T26_RS05780 (V6T26_05780) - 1273229..1273675 (-) 447 WP_195914773.1 arginine repressor -
  V6T26_RS05785 (V6T26_05785) - 1273662..1274489 (-) 828 WP_410541063.1 TlyA family RNA methyltransferase -
  V6T26_RS05790 (V6T26_05790) - 1274482..1275354 (-) 873 WP_195914771.1 polyprenyl synthetase family protein -
  V6T26_RS05795 (V6T26_05795) - 1275354..1275569 (-) 216 WP_195914770.1 exodeoxyribonuclease VII small subunit -
  V6T26_RS05800 (V6T26_05800) xseA 1275559..1276887 (-) 1329 WP_410541064.1 exodeoxyribonuclease VII large subunit -
  V6T26_RS05805 (V6T26_05805) - 1277074..1277835 (-) 762 WP_002890759.1 hypothetical protein -

Sequence

Protein


Download         Length: 556 a.a.        Molecular weight: 62345.37 Da        Isoelectric Point: 4.5371

>NTDB_id=853069 V6T26_RS05775 WP_037601101.1 1271550..1273220(-) (recN) [Streptococcus salivarius strain KSS11]
MLLEITIKNFAIIEEISLNFENGMTVLTGETGAGKSIIIDAMNLMLGARASSEVVRHSASKAEIQGFFSIEQNPALVSIL
EDNGIPVEDELIIRREIFQNGRSVSRINGQMVNLTTLKAVGHFLVDIHGQHDQEELMKPALHITMLDAFGDKEFFQTKKE
YQEYFDRYRELRKAVLEKQKNEQEHKARIEMLAFQIAEIEAVSLKSGEDLALMQERDKLLNHKQIADTLTNAYVMLDNED
FSSLSNVRSAMNDLQSLEEYDSDYKELSGNLSEAYYVLEDVTKQLGDFLDNLDFDAGRLQEIEHRLDTINAITRKYGGTV
DDVLDYLENSSKEYNLLTGNSSSSDAMEQELKQLEKDLLASAETLQTARHQIATALEAEIKNELCDLYMDKADFKVTFTK
GKFNRDGNEQVEFYISTNPGEGFKPLVKVASGGELSRLMLAIKSAFARKEDKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
SHGQVLAISHLPQVIAIADYQFFISKESDNETTVSRVRLLTPEERVQEIAKMLAGDNVTEAALSQARALLKVDDSL

Nucleotide


Download         Length: 1671 bp        

>NTDB_id=853069 V6T26_RS05775 WP_037601101.1 1271550..1273220(-) (recN) [Streptococcus salivarius strain KSS11]
ATGCTTCTCGAAATTACGATAAAGAATTTCGCAATTATTGAAGAGATTTCTCTAAACTTTGAGAATGGTATGACCGTCCT
TACTGGTGAAACAGGTGCTGGTAAGTCCATTATTATAGATGCTATGAATCTTATGTTGGGTGCTAGGGCTTCTAGTGAGG
TTGTCCGTCATTCAGCATCTAAGGCTGAAATTCAGGGCTTCTTTTCAATCGAACAAAATCCTGCCTTGGTTAGTATCTTG
GAAGATAATGGGATTCCTGTTGAGGATGAATTGATTATCCGTCGTGAAATCTTCCAAAATGGTAGAAGTGTTAGTCGCAT
CAATGGGCAGATGGTCAATTTAACGACGCTTAAGGCTGTTGGGCACTTCTTGGTAGATATCCATGGACAACATGACCAGG
AAGAGCTTATGAAACCTGCTCTGCATATTACCATGCTTGATGCCTTTGGTGACAAGGAATTTTTCCAGACTAAGAAAGAG
TACCAGGAGTATTTTGACCGCTATCGTGAGTTAAGAAAAGCTGTTCTAGAAAAGCAGAAAAATGAGCAGGAGCATAAGGC
TCGAATTGAAATGTTAGCATTTCAGATTGCAGAAATTGAAGCAGTCTCTCTAAAATCAGGAGAAGATTTGGCTTTGATGC
AGGAGCGAGACAAGCTTCTTAATCATAAGCAGATTGCTGATACCTTAACAAATGCCTATGTCATGCTGGATAATGAAGAT
TTTTCAAGCCTTTCAAATGTTCGTTCTGCCATGAATGACCTCCAGTCTCTTGAAGAGTATGACTCTGATTACAAAGAACT
CTCTGGAAATCTATCAGAAGCCTATTATGTTCTGGAAGATGTCACTAAGCAACTAGGTGATTTTTTGGATAATCTGGACT
TTGATGCTGGGCGTTTACAAGAGATTGAACACCGCTTAGATACCATTAATGCCATTACTCGTAAATATGGTGGGACTGTC
GATGACGTCTTGGATTATCTGGAAAATTCAAGTAAAGAATACAATCTTCTGACAGGAAACTCTAGCTCGTCAGATGCTAT
GGAACAAGAGCTTAAGCAACTTGAAAAGGACTTGCTTGCGTCTGCGGAGACCCTACAAACAGCACGCCATCAAATTGCTA
CGGCTCTTGAAGCTGAGATTAAGAACGAGTTATGCGACCTCTATATGGATAAGGCTGATTTTAAAGTCACCTTTACTAAG
GGGAAATTTAATCGTGATGGTAATGAGCAGGTTGAGTTTTACATCTCAACCAATCCAGGTGAAGGCTTTAAACCGCTTGT
TAAGGTAGCTTCAGGTGGTGAATTATCTCGACTCATGTTAGCGATTAAGTCAGCCTTTGCCCGCAAAGAAGATAAAACAA
GTATCGTCTTTGATGAGGTTGATACTGGCGTTTCAGGACGTGTTGCCCAAGCCATCGCTCAGAAGATTCATAAGATTGGG
AGTCATGGTCAGGTCTTGGCCATCAGTCACCTTCCTCAAGTTATTGCTATTGCTGATTATCAGTTCTTTATTTCTAAGGA
AAGCGATAATGAGACAACTGTCTCTCGTGTTCGTCTTTTGACACCTGAGGAAAGGGTGCAAGAAATCGCTAAGATGTTAG
CAGGTGATAACGTGACGGAGGCTGCCTTGAGCCAAGCAAGAGCTTTGTTAAAGGTGGATGACTCTCTTTAG

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.979

100

0.453