Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   V6T26_RS04965 Genome accession   NZ_CP145858
Coordinates   1080562..1081632 (-) Length   356 a.a.
NCBI ID   WP_410541527.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1075562..1086632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6T26_RS04950 (V6T26_04950) pstB 1076284..1077042 (+) 759 WP_002890956.1 phosphate ABC transporter ATP-binding protein PstB -
  V6T26_RS04955 (V6T26_04955) phoU 1077071..1077724 (+) 654 WP_004182526.1 phosphate signaling complex protein PhoU -
  V6T26_RS04960 (V6T26_04960) - 1077858..1080398 (+) 2541 WP_410541526.1 M1 family metallopeptidase -
  V6T26_RS04965 (V6T26_04965) xerS 1080562..1081632 (-) 1071 WP_410541527.1 tyrosine recombinase XerS Machinery gene
  V6T26_RS04970 (V6T26_04970) - 1081837..1082826 (-) 990 WP_073689712.1 lipoate--protein ligase -
  V6T26_RS04975 (V6T26_04975) - 1082950..1084077 (+) 1128 WP_232621281.1 hypothetical protein -
  V6T26_RS04980 (V6T26_04980) - 1084254..1085503 (+) 1250 Protein_964 ISL3 family transposase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41460.58 Da        Isoelectric Point: 9.4644

>NTDB_id=853062 V6T26_RS04965 WP_410541527.1 1080562..1081632(-) (xerS) [Streptococcus salivarius strain KSS11]
MKRELLLEKIEEYKSLMPWFVLEYYQSKLSVPYSFTTLYEYLKEYKRFFDWLIDSGISDAHDIASIDIKTLENLTKKDME
SFVLYLRERPSLNTYSKKQGVSQTTINRTLSALSSLYKYLTEEVEGPDGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETMEFLDYIENEYEVKLSNRAKSSFYKNKERDLAIIALLLASGVRLSEAVNLDLKDINLKMMVIDVTRKGGKRDS
VNVASFAKPYLENYLSIRDKRYKAEKQDLALFLTEYRGVPNRIDASSIEKMVAKYSQDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=853062 V6T26_RS04965 WP_410541527.1 1080562..1081632(-) (xerS) [Streptococcus salivarius strain KSS11]
ATGAAACGTGAACTCTTACTCGAAAAAATTGAAGAATACAAATCTCTAATGCCCTGGTTTGTTCTGGAGTATTATCAGTC
TAAACTATCGGTTCCATATTCTTTTACGACCTTATACGAATACCTTAAGGAATATAAACGCTTTTTTGACTGGTTGATTG
ACTCAGGTATTTCAGATGCTCATGATATTGCCTCAATTGACATCAAAACCCTGGAAAATCTAACTAAAAAAGACATGGAG
TCATTTGTGCTCTATCTACGTGAACGTCCGTCCTTAAATACCTATTCCAAGAAACAGGGAGTTTCTCAAACAACCATTAA
CCGTACGCTTTCAGCTCTATCTAGTCTCTATAAGTATTTAACTGAGGAGGTCGAGGGTCCTGACGGTGAGCCATATTTCT
ATCGTAACGTCATGAAAAAAGTTTCAACTAAGAAAAAGAAAGAAACCTTGGCTGCGCGTGCTGAGAATATCAAGCAGAAA
CTCTTTCTAGGCGATGAAACCATGGAATTTCTTGATTATATCGAAAATGAATACGAAGTTAAGCTCTCAAATCGCGCAAA
ATCTTCGTTTTACAAGAATAAAGAACGTGATTTAGCGATAATAGCCTTGCTACTGGCTTCAGGGGTTCGACTTTCTGAAG
CTGTTAACCTGGACCTTAAAGATATCAATCTGAAAATGATGGTCATTGATGTTACTCGAAAAGGTGGCAAACGAGACTCA
GTTAATGTAGCAAGTTTTGCAAAACCTTATCTTGAAAATTATCTTAGTATCCGTGATAAACGCTATAAGGCTGAAAAGCA
AGACCTTGCCCTATTTTTAACGGAATATCGAGGGGTTCCAAACCGTATTGATGCTTCAAGTATCGAAAAAATGGTTGCCA
AATATTCTCAGGATTTCAAGATACGTGTGACTCCCCATAAACTACGACACACTCTGGCAACACGTCTTTATGATGCTACC
AAGTCTCAAGTTTTAGTTAGCCACCAACTTGGCCATGCTTCCACTCAGGTCACTGATCTTTATACTCATATCGTCAATGA
TGAGCAAAAAAATGCTCTAGATAATTTATAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(181-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

83.708

100

0.837