Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE/comE1   Type   Regulator
Locus tag   V6T26_RS02480 Genome accession   NZ_CP145858
Coordinates   472805..473542 (+) Length   245 a.a.
NCBI ID   WP_021143758.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS11     
Function   activate transcription of early competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 467805..478542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6T26_RS02460 (V6T26_02460) - 467998..469047 (+) 1050 WP_410541370.1 LLM class flavin-dependent oxidoreductase -
  V6T26_RS02465 (V6T26_02465) - 469143..469895 (+) 753 WP_410541371.1 DUF4767 domain-containing protein -
  V6T26_RS02470 (V6T26_02470) tehB 469978..470856 (-) 879 WP_073685865.1 SAM-dependent methyltransferase TehB -
  V6T26_RS02475 (V6T26_02475) - 471269..472591 (-) 1323 WP_410541372.1 matrixin family metalloprotease -
  V6T26_RS02480 (V6T26_02480) comE/comE1 472805..473542 (+) 738 WP_021143758.1 LytR/AlgR family response regulator transcription factor Regulator
  V6T26_RS02485 (V6T26_02485) - 473854..475032 (+) 1179 WP_064524194.1 sensor histidine kinase -
  V6T26_RS02490 (V6T26_02490) - 475144..476523 (+) 1380 WP_410541373.1 hypothetical protein -
  V6T26_RS02495 (V6T26_02495) rpsP 476686..476958 (+) 273 WP_002884675.1 30S ribosomal protein S16 -
  V6T26_RS02500 (V6T26_02500) - 476970..477218 (+) 249 WP_410541374.1 KH domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 28132.10 Da        Isoelectric Point: 4.7169

>NTDB_id=853041 V6T26_RS02480 WP_021143758.1 472805..473542(+) (comE/comE1) [Streptococcus salivarius strain KSS11]
MLSIIVLEDDALQRHRVGRLLDEAVEESKAVVDGITFYEQGQELLDADRGSGKSMVYLLDIDLKNQTKQGLDIGLEIRKE
DLKAQIAFVTAYSEFMPLTFRYKIQALDFVDKSMEDVDLKRALVELLDFAYSQVEQETKAQSLTVKTDKNDVNIPYDDIL
YIETAPVPHKLIAHTKSNLVEFYGKIAEVAKLDDIFFQTHRSFVVNVNNVTSVDRTANMVFFEENESCLLSRTRKKELLE
RLKNR

Nucleotide


Download         Length: 738 bp        

>NTDB_id=853041 V6T26_RS02480 WP_021143758.1 472805..473542(+) (comE/comE1) [Streptococcus salivarius strain KSS11]
ATGCTTTCTATTATCGTCCTTGAAGATGATGCCTTGCAGCGTCATCGTGTTGGTCGTTTATTGGACGAAGCAGTTGAGGA
GTCGAAGGCCGTTGTTGATGGGATTACTTTTTATGAACAGGGTCAGGAATTGTTAGATGCTGATAGAGGTTCGGGTAAAT
CCATGGTTTATCTTTTGGATATTGACCTTAAAAATCAAACTAAGCAGGGACTAGATATTGGGCTTGAAATCCGTAAGGAA
GACTTGAAAGCACAAATTGCCTTTGTTACAGCTTACTCGGAGTTTATGCCCTTAACCTTCCGTTATAAGATTCAAGCTCT
AGACTTTGTCGATAAATCCATGGAAGATGTGGATCTTAAGAGAGCTTTAGTAGAACTTTTAGATTTTGCTTATTCACAGG
TTGAGCAAGAAACCAAGGCACAGAGTCTAACTGTTAAAACGGATAAAAATGATGTTAATATTCCTTATGATGACATTTTA
TACATTGAGACAGCCCCTGTGCCACATAAGTTAATCGCTCATACCAAGTCAAACCTAGTGGAATTCTATGGGAAAATTGC
AGAAGTAGCAAAATTGGATGATATTTTCTTCCAAACGCACCGCTCTTTTGTTGTCAATGTGAATAATGTGACAAGTGTGG
ATCGTACAGCTAATATGGTCTTCTTTGAGGAAAATGAGTCATGCCTCCTATCGCGGACACGTAAAAAGGAACTTTTGGAA
CGTTTGAAAAATCGTTAG

Domains

Predicted by InterProScan.

LytTr DNA-binding domain (LytTR)

(152-242)

Response regulator receiver domain (Response_reg)

(4-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE/comE1 Streptococcus equinus JB1

37.449

99.184

0.371