Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QYM03_RS19675 Genome accession   NZ_CP129401
Coordinates   4437299..4438819 (+) Length   506 a.a.
NCBI ID   WP_025889653.1    Uniprot ID   -
Organism   Shewanella algae strain MCCC 1A11468     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4432299..4443819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYM03_RS19650 (QYM03_19650) - 4433160..4434128 (-) 969 WP_301560967.1 ABC transporter substrate-binding protein -
  QYM03_RS19655 (QYM03_19655) - 4434318..4434566 (-) 249 WP_025010076.1 hypothetical protein -
  QYM03_RS19660 (QYM03_19660) - 4434722..4435537 (-) 816 WP_096142467.1 EAL domain-containing protein -
  QYM03_RS19665 (QYM03_19665) - 4435856..4436653 (+) 798 WP_208140979.1 winged helix-turn-helix domain-containing protein -
  QYM03_RS19670 (QYM03_19670) - 4436641..4437141 (+) 501 WP_025010079.1 hypothetical protein -
  QYM03_RS19675 (QYM03_19675) comM 4437299..4438819 (+) 1521 WP_025889653.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QYM03_RS19680 (QYM03_19680) - 4438919..4439815 (+) 897 WP_096142469.1 LysR substrate-binding domain-containing protein -
  QYM03_RS19685 (QYM03_19685) phnX 4439918..4440727 (-) 810 WP_208172792.1 phosphonoacetaldehyde hydrolase -
  QYM03_RS19690 (QYM03_19690) - 4440715..4441842 (-) 1128 WP_301560968.1 phosphonoacetaldehyde reductase -
  QYM03_RS19695 (QYM03_19695) phnE 4441861..4442664 (-) 804 WP_045283250.1 phosphonate ABC transporter, permease protein PhnE -
  QYM03_RS19700 (QYM03_19700) phnC 4442658..4443485 (-) 828 WP_025010083.1 phosphonate ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54441.90 Da        Isoelectric Point: 8.7098

>NTDB_id=853020 QYM03_RS19675 WP_025889653.1 4437299..4438819(+) (comM) [Shewanella algae strain MCCC 1A11468]
MPIARVATRAAKGVEAPQVLVEAHLSNGLPAFNLVGLPEASVKEARERVRSAIINAGFEFPMRRITINLAPADLPKQGGR
YDLPIAIGILAASGQLPLKSLDDHEFVGELGLSGEVRHCTGILPVIIAARQRGIKLVLPQDNRSEADLVGYRQCCLAQHL
QHIAAYLHGQQTLPGIVPGTEWLEQSKPHSSDCLSEVIGQYQAKQALEIAAAGGHNLLMLGPPGTGKTMLASRIISLLPP
MSYEEALEVAAIHSVAGMATEPGEFYRRPFRAPHHTSSAISLVGGGSIPKPGEISLAHLGVLFLDEIAEFPRKVLDCLRE
PMETGHVIISRAAAKLRFDARFQLIAAMNPSPCGDAGPGSRASPEQIRRYLARLSGPFIDRFDLTIEVPKLPPGALTSEA
AQGETSEQIAARVAAARELQLSRAGVLNSQLGSKALKQAGFKPGDLAFLEQSVNQLGLSVRSFHRLQRVARTIADLQLSP
MVERRHLAQALGYRAMDRLLASLQQL

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=853020 QYM03_RS19675 WP_025889653.1 4437299..4438819(+) (comM) [Shewanella algae strain MCCC 1A11468]
ATGCCCATAGCCAGAGTTGCCACCCGAGCCGCCAAAGGTGTGGAGGCGCCTCAGGTACTGGTCGAAGCTCACCTCTCCAA
CGGCCTGCCGGCCTTCAATCTAGTGGGGTTGCCGGAAGCTTCGGTCAAGGAAGCCAGAGAAAGAGTCCGCAGCGCCATAA
TCAATGCGGGTTTTGAATTCCCCATGCGCAGGATAACCATCAATCTGGCACCGGCCGATCTGCCCAAGCAGGGTGGACGT
TACGACCTTCCTATCGCCATTGGCATTCTGGCAGCATCCGGGCAACTGCCACTGAAATCTCTGGACGATCATGAATTTGT
CGGTGAGCTTGGGCTGTCCGGTGAGGTCAGGCACTGCACTGGTATCCTGCCGGTGATCATCGCCGCCCGTCAAAGAGGCA
TCAAACTGGTATTGCCACAGGATAACCGCAGTGAGGCCGATTTGGTGGGCTACCGGCAATGTTGCCTGGCCCAGCACCTG
CAACATATCGCCGCCTATCTGCACGGGCAACAAACCCTGCCGGGGATAGTACCGGGAACCGAATGGCTGGAACAGTCAAA
GCCACACTCGAGTGATTGCCTGTCGGAGGTCATAGGCCAATATCAAGCCAAACAAGCGCTGGAAATCGCTGCCGCCGGCG
GGCATAACCTGCTGATGCTGGGGCCACCTGGCACAGGCAAAACCATGCTGGCCAGCCGGATAATCTCACTCCTGCCCCCC
ATGAGTTATGAAGAGGCGCTGGAAGTGGCTGCGATTCATTCAGTGGCCGGCATGGCCACTGAGCCGGGGGAGTTTTATCG
CCGCCCGTTTCGCGCTCCGCACCACACCAGCTCCGCCATCTCTTTGGTGGGTGGCGGCTCGATTCCCAAACCCGGCGAGA
TTTCACTGGCTCACCTGGGAGTGCTGTTTCTCGATGAAATTGCCGAGTTTCCCCGCAAGGTACTCGACTGCTTGCGTGAA
CCCATGGAAACCGGCCATGTCATCATCTCCCGCGCCGCAGCCAAACTGCGCTTCGATGCCCGTTTTCAACTCATCGCCGC
CATGAATCCCAGCCCCTGTGGTGATGCCGGCCCGGGAAGCCGCGCCAGCCCAGAGCAGATCCGCCGTTACCTGGCCCGGC
TGTCAGGCCCTTTCATTGACAGATTCGACCTCACCATTGAGGTGCCCAAACTCCCGCCAGGCGCCTTGACTTCAGAGGCG
GCGCAAGGTGAAACCAGTGAGCAGATAGCCGCCAGAGTCGCTGCGGCCAGGGAACTACAACTCAGCCGCGCCGGCGTACT
CAATAGTCAGTTGGGCAGTAAGGCATTGAAGCAGGCAGGTTTCAAACCCGGCGATCTGGCGTTTCTCGAACAGAGTGTCA
ATCAGCTGGGATTATCGGTGCGCAGCTTTCATCGGCTGCAACGAGTGGCGCGCACCATAGCCGATCTGCAGCTCAGCCCC
ATGGTCGAGCGGCGCCATCTGGCCCAGGCCCTGGGTTATCGGGCGATGGACCGTTTGCTGGCCAGCCTGCAACAGCTCTG
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.819

100

0.559
  comM Haemophilus influenzae Rd KW20

54.883

100

0.555
  comM Vibrio campbellii strain DS40M4

55.227

100

0.553
  comM Glaesserella parasuis strain SC1401

54.832

100

0.549
  comM Legionella pneumophila str. Paris

47.896

98.617

0.472
  comM Legionella pneumophila strain ERS1305867

47.896

98.617

0.472
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.281

100

0.433