Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   prwr041_RS01085 Genome accession   NZ_AP024484
Coordinates   263560..264942 (+) Length   460 a.a.
NCBI ID   WP_207154500.1    Uniprot ID   -
Organism   Prevotella herbatica strain WR041     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 258560..269942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  prwr041_RS01075 (prwr041_02080) - 260224..262527 (-) 2304 WP_207154498.1 lipopolysaccharide assembly protein LapB -
  prwr041_RS01080 (prwr041_02090) - 262520..263446 (-) 927 WP_207154499.1 ABC transporter substrate-binding protein -
  prwr041_RS01085 (prwr041_02100) radA 263560..264942 (+) 1383 WP_207154500.1 DNA repair protein RadA Machinery gene
  prwr041_RS01090 (prwr041_02110) queC 264964..265617 (+) 654 WP_207154501.1 7-cyano-7-deazaguanine synthase QueC -
  prwr041_RS01095 (prwr041_02120) - 265788..267038 (+) 1251 WP_207154502.1 phosphoglycerate kinase -
  prwr041_RS01100 (prwr041_02130) - 267142..267750 (-) 609 WP_207154503.1 4'-phosphopantetheinyl transferase family protein -
  prwr041_RS01105 (prwr041_02140) gldE 267761..269077 (-) 1317 WP_207154504.1 gliding motility-associated protein GldE -
  prwr041_RS01110 (prwr041_02150) - 269099..269557 (-) 459 WP_207154505.1 single-stranded DNA-binding protein -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 50388.81 Da        Isoelectric Point: 6.5880

>NTDB_id=85297 prwr041_RS01085 WP_207154500.1 263560..264942(+) (radA) [Prevotella herbatica strain WR041]
MAKDKIAYVCDNCGQESTKWIGKCPSCGQWNTFKEIRISSDSGSFAAKSAANAVVSGLNRNNKPQNLNEISAKDEPRIDM
HDEELNRVLGGGLVPGSIVLLGGEPGIGKSTLTLQTILKMNERKVLYVSGEESAHQIKMRADRIGSDNDIMVLCETSLES
IFDSVKNVKPELLIIDSIQTIYTSDVDSSPGSITQVRECASALLRFAKTSGIPVILIGHINKEGTLAGPKILEHIVDTVI
QFEGDQHYMYRILRSIKNRFGSTSELGIYEMRQDGLRQVSNPSELLLTQDHEGLSGIAISSAIEGVRPFLVETQALVSSA
AYGTPQRSATGFDQRRLNMLLAVLEKRVGFKLMQKDVFINIAGGLRVTDLAMDLSIIAAVLSSNVDTAIETGWCMAGEVG
LSGEVRPINRIEQRVAEAEKLGFTHMIIPQYNLKGFAHNKYKIELHPVRKVEEALRALFG

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=85297 prwr041_RS01085 WP_207154500.1 263560..264942(+) (radA) [Prevotella herbatica strain WR041]
ATGGCCAAAGATAAAATAGCATACGTATGTGATAACTGCGGACAGGAATCAACAAAGTGGATAGGCAAATGCCCTAGCTG
CGGACAGTGGAATACGTTCAAAGAAATAAGAATTTCTAGCGATTCTGGTTCTTTTGCCGCAAAGTCTGCAGCAAATGCTG
TAGTTAGCGGATTAAACCGTAATAATAAGCCACAAAATCTTAACGAAATATCAGCTAAGGATGAGCCTCGAATTGATATG
CACGACGAAGAGTTAAATCGAGTGCTTGGCGGAGGGCTTGTACCAGGAAGTATCGTATTGCTTGGCGGTGAACCTGGTAT
TGGAAAAAGTACTCTGACCCTGCAAACAATATTGAAGATGAATGAGCGCAAAGTCCTTTACGTCAGCGGCGAAGAAAGTG
CGCATCAAATTAAGATGAGAGCAGACAGAATTGGAAGTGATAATGATATAATGGTACTTTGCGAGACATCTTTGGAAAGT
ATCTTCGACAGCGTGAAAAATGTTAAACCTGAATTGCTGATTATTGATTCTATACAGACTATATATACAAGTGACGTAGA
TAGTTCACCTGGAAGCATAACTCAGGTAAGGGAATGCGCATCTGCCTTATTAAGATTTGCGAAGACGAGTGGTATTCCGG
TCATCCTCATTGGACATATAAACAAAGAGGGAACTCTTGCTGGACCTAAAATATTGGAGCATATAGTAGATACAGTAATA
CAGTTTGAGGGTGATCAGCATTATATGTACAGAATATTACGTTCAATAAAAAACAGATTTGGAAGTACTTCAGAACTTGG
CATATACGAAATGCGACAAGACGGACTAAGACAAGTTTCAAATCCGTCTGAATTATTACTCACACAAGACCACGAAGGAC
TTTCGGGCATCGCTATATCTTCAGCAATAGAAGGAGTAAGACCATTCCTTGTTGAAACTCAGGCACTAGTTTCATCTGCC
GCCTATGGCACTCCGCAACGCTCCGCAACAGGTTTTGATCAAAGGCGTCTGAATATGCTTTTGGCCGTACTTGAAAAACG
AGTAGGATTTAAGCTAATGCAAAAAGATGTTTTCATAAATATTGCAGGAGGATTGCGAGTAACAGATTTAGCTATGGACC
TAAGTATCATAGCTGCAGTCCTATCAAGTAATGTAGACACTGCTATTGAAACAGGCTGGTGTATGGCTGGAGAAGTAGGA
CTCAGCGGAGAGGTGCGCCCTATTAACAGAATAGAGCAACGCGTTGCAGAGGCGGAAAAATTAGGATTTACGCACATGAT
AATTCCTCAATATAATCTAAAAGGATTTGCACATAACAAATATAAAATTGAGTTGCATCCTGTAAGAAAGGTTGAAGAAG
CACTGAGAGCTTTATTTGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(73-224)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(346-432)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.571

100

0.502
  radA Streptococcus mitis NCTC 12261

45.553

100

0.457
  radA Streptococcus pneumoniae Rx1

45.553

100

0.457
  radA Streptococcus pneumoniae D39

45.553

100

0.457
  radA Streptococcus pneumoniae R6

45.553

100

0.457
  radA Streptococcus pneumoniae TIGR4

45.553

100

0.457
  radA Streptococcus mitis SK321

45.336

100

0.454

Multiple sequence alignment