Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   V6T01_RS04395 Genome accession   NZ_CP145856
Coordinates   879515..881716 (+) Length   733 a.a.
NCBI ID   WP_410541066.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 874515..886716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6T01_RS04365 (V6T01_04350) hflX 874774..876012 (+) 1239 WP_084869941.1 GTPase HflX -
  V6T01_RS04370 (V6T01_04355) - 876005..876646 (+) 642 WP_410541067.1 cystathionine beta-lyase -
  V6T01_RS04375 (V6T01_04360) rnz 876678..877607 (+) 930 WP_002884122.1 ribonuclease Z -
  V6T01_RS04380 (V6T01_04365) - 877607..878374 (+) 768 WP_013990734.1 SDR family NAD(P)-dependent oxidoreductase -
  V6T01_RS04385 (V6T01_04370) - 878386..878610 (+) 225 Protein_817 class I SAM-dependent methyltransferase -
  V6T01_RS04390 (V6T01_04375) - 878645..879049 (+) 405 WP_073950506.1 GNAT family N-acetyltransferase -
  V6T01_RS04395 (V6T01_04380) recJ 879515..881716 (+) 2202 WP_410541066.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  V6T01_RS04400 (V6T01_04385) - 881838..882356 (+) 519 WP_004182660.1 adenine phosphoribosyltransferase -
  V6T01_RS04405 (V6T01_04390) metA 882529..883473 (+) 945 WP_410541065.1 homoserine O-succinyltransferase -
  V6T01_RS04410 (V6T01_04395) - 883545..884243 (+) 699 WP_195914768.1 DnaD domain-containing protein -
  V6T01_RS04415 (V6T01_04400) nth 884243..884887 (+) 645 WP_021144303.1 endonuclease III -
  V6T01_RS04420 (V6T01_04405) - 885015..885776 (+) 762 WP_002890759.1 hypothetical protein -

Sequence

Protein


Download         Length: 733 a.a.        Molecular weight: 82252.35 Da        Isoelectric Point: 4.3436

>NTDB_id=852938 V6T01_RS04395 WP_410541066.1 879515..881716(+) (recJ) [Streptococcus salivarius strain KSS1]
MITSTYDWKINTKEPDAGFFKLAKERGLAETAAKIAYERGITTEDTLEDFLKADLSHLHDPYLLHDMDKAVARIRQAIEN
YEQILVYGDYDADGMTSASIVKEALEMMGAEARVYLPNRFTDGYGPNESVYKYFIEQEGISLIVTVDNGVAGNEAIAYAQ
EQGVDVIVTDHHSMPAQLPDAYAIVHPEHPDTDYPFKYLAGCGVAFKLATALLETIPTEMLDLVAIGTIADMVSLTDENR
IMVKVGLEILKTTERIGLQELLRISDVDPTTISEETVGFKLAPQLNALGRLDDPNPAIELLTGFDDEEAQAIALEINAKN
EERKEVVQNIFDEAITMVDPDKPVQVLAKEGWHPGVLGIVAGRIMEQISQTVVVLNIEDGLAKGSARSLESINIFHALDD
HRDIFTAFGGHAGAAGMTLPEENLGRLSEILCHYVYDNDIDTSAKNTLNLDEELQLSELSLDTIKSLEKLAPFGMDNKKP
VFWLHDITVTQARTMGQNGAHLKFKVKQGKDSFDVVAFNKGHLLQEFQQAQGLELAVTLSVNVWNGQTTLQLMLEDARVD
GVQLFDFRSKNMALPEGLPTVEEASDTEPAVVLNTLPDSATEVKEWFEGKDFQAIYFKNSIKEAYYLTGYGTREQFARLY
KTIYQFPEFDVRYKLDELSHYLKIDKILLIKMIQIFDELDFVTIDNGVMTVNKEAEKREIEDSKIFQDLKHLVKFQELMA
LGTPQEIYDWLYK

Nucleotide


Download         Length: 2202 bp        

>NTDB_id=852938 V6T01_RS04395 WP_410541066.1 879515..881716(+) (recJ) [Streptococcus salivarius strain KSS1]
ATGATTACATCAACGTATGATTGGAAAATAAACACAAAAGAGCCAGATGCTGGCTTTTTTAAACTTGCCAAAGAACGTGG
GTTGGCAGAAACAGCAGCCAAGATTGCCTATGAACGTGGCATTACGACAGAAGATACTCTTGAAGACTTTCTAAAGGCTG
ATTTATCACACCTTCATGATCCTTATCTTCTTCATGATATGGATAAGGCAGTGGCTAGAATTCGTCAGGCCATTGAAAAT
TATGAGCAAATCTTAGTCTATGGAGACTATGATGCGGATGGAATGACGTCAGCATCGATTGTCAAGGAAGCCCTTGAAAT
GATGGGGGCTGAAGCTAGAGTCTATTTGCCTAACCGGTTTACAGATGGTTATGGGCCAAACGAAAGTGTCTACAAGTACT
TCATTGAACAGGAAGGCATTTCACTCATTGTTACAGTGGATAATGGAGTAGCGGGTAATGAGGCTATCGCTTATGCGCAA
GAGCAAGGTGTGGACGTTATCGTTACAGACCATCACAGTATGCCGGCACAGCTTCCAGATGCCTATGCCATTGTCCATCC
AGAGCATCCAGATACCGATTATCCTTTTAAGTATTTGGCAGGTTGTGGTGTAGCTTTCAAATTGGCAACTGCCCTCCTTG
AAACTATTCCTACTGAGATGTTGGACTTGGTAGCCATTGGTACCATTGCCGATATGGTTAGCCTAACGGATGAAAATCGT
ATTATGGTCAAGGTCGGCCTGGAAATTCTAAAGACTACTGAGCGTATTGGGCTTCAAGAATTGCTCCGCATTTCAGATGT
AGACCCAACAACGATTTCTGAAGAAACGGTCGGTTTCAAATTGGCCCCTCAACTCAATGCCTTGGGGCGCTTAGATGATC
CAAATCCAGCCATTGAACTGCTGACCGGATTTGACGATGAAGAGGCCCAAGCCATTGCTCTGGAAATCAATGCTAAAAAT
GAAGAACGTAAGGAAGTTGTTCAAAACATCTTTGATGAAGCCATAACCATGGTAGACCCGGACAAACCTGTTCAGGTTCT
GGCCAAGGAAGGCTGGCATCCTGGCGTTCTAGGTATTGTGGCGGGGCGTATCATGGAACAAATTAGTCAGACAGTGGTGG
TTTTGAATATTGAAGATGGCTTGGCTAAGGGTTCCGCTCGTAGTTTGGAATCTATCAATATCTTCCATGCCCTTGATGAC
CACCGAGACATCTTTACTGCTTTTGGAGGACATGCTGGAGCAGCGGGGATGACACTTCCTGAAGAAAATCTTGGACGACT
ATCAGAGATTTTGTGTCATTATGTCTACGATAATGACATTGATACGAGTGCCAAAAATACGTTAAATTTAGACGAGGAGC
TCCAACTCAGTGAGCTTAGCTTGGATACCATTAAGAGCCTAGAAAAACTAGCACCTTTTGGCATGGATAATAAAAAGCCA
GTCTTTTGGCTACATGATATTACCGTTACTCAAGCTAGGACTATGGGACAAAACGGAGCCCATCTTAAGTTTAAGGTTAA
GCAAGGAAAGGATAGTTTTGATGTTGTGGCCTTTAATAAAGGTCATTTGCTTCAAGAATTTCAACAAGCTCAGGGGTTGG
AATTAGCAGTGACCCTGTCCGTTAATGTATGGAATGGTCAGACAACGCTCCAGCTCATGCTAGAAGATGCGCGTGTGGAT
GGTGTTCAGTTATTTGATTTTCGCTCAAAAAATATGGCACTGCCTGAAGGCCTACCAACGGTAGAAGAAGCATCAGACAC
TGAACCTGCGGTTGTCCTCAACACCTTACCTGATTCAGCGACAGAAGTAAAAGAGTGGTTTGAAGGTAAAGATTTCCAGG
CTATCTATTTTAAAAATAGTATTAAGGAAGCCTATTATCTGACAGGTTATGGAACAAGAGAGCAATTTGCAAGGCTCTAT
AAAACCATTTACCAATTCCCAGAATTCGATGTCCGCTATAAACTGGATGAGCTCAGTCATTACCTTAAAATCGATAAGAT
ACTTCTGATTAAGATGATTCAGATTTTTGATGAATTGGATTTTGTGACTATTGATAATGGTGTTATGACAGTCAATAAAG
AAGCTGAAAAACGTGAGATTGAGGACAGCAAGATTTTCCAAGATCTTAAACATCTCGTCAAGTTCCAAGAACTTATGGCT
TTAGGGACACCACAGGAAATTTATGACTGGCTTTATAAGTAG

Domains

Predicted by InterProScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(584-731)

DHHA1 domain (DHHA1)

(317-431)

DHH family (DHH)

(83-228)

RecJ OB domain (RecJ_OB)

(451-556)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

67.663

100

0.679
  recJ Bacillus subtilis subsp. subtilis str. 168

37.275

100

0.396